The latest dataset can be downloaded from the Harvard Dataverse repository.
Each patient has the same naming format, such as
images
| 001
| sag.nii.gz
| axial.nii.gz
Segmentations and radiomics features are stored in
derivatives
| 001
| sag-seg.nii.gz
| axial-seg.nii.gz
We provide a Docker container to segment MR images on your side. segment_one_subject.sh is the shell script to run the container on one subject. Please make sure:
(a) Your data has the same naming format as the example above.
(b) The nvidia-container-toolkit package is installed corrected.