hocinebib / 3d_visual_pdb_py

3D vizualisation of pdb files with python

3D_Visual_pdb_py

3D vizualisation of pdb files with python

Description :

Small python program for 3D representation of proteins using mayavi.

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Requirements :

System :

• Linux : This program works on a Linux environment.

Python packages :

In order to be able to run this program of course you need to have python3 but also some python packages :

• pandas
• NumPy
• SciPy
• Mayavi

Data files :

You need a pdb file as input to run the program.

Script files :

coor_atoms.py

This script is used to read the pdb files and turns the extracted informations into pandas data frame.

coming soon

Usage :

1. First clone this repository :

$git clone  

or download it.

2. To run the program use the following command line :

$python3 

Result :

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Ball and stick representation :

Space filling representation :

Ribbon representation :

Lines representation :

Distance representation (less than 4A) :

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Hocine Meraouna