hnumcc Goto Github PK

eukdetect

evident

gan-gmhi

gatk-snp-calling

Full GATK SNP calling pipeline

ggplot2

An implementation of the Grammar of Graphics in R

gmhi_2020

Scripts for generating results in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profiling". Nature Communications, 2020. https://doi.org/10.1038/s41467-020-18476-8.

gt-pro

halla

Hierarchical All-against-All association

halla_legacy

Hierarchical All-against-All association testing is designed as a command-line tool to find associations in high-dimensional, heterogeneous datasets.

hiorco

Higher-Order Co-occurrence

hnu082_gos_project

HNU082_GOS_project

host-dependent-co-evolution-of-supplemented-probiotic

The host-dependent co-evolution of supplemented probiotic and the indigenous gut microbiota

host_gene_microbiome_interactions

Analysis framework for integrating gut microbiome and host gene expression data

humann

HUMAnN 2.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

human_reads_in_metagenome

This is a repository of the codes used in the Tomofuji et al (reconstruction of the personal information from meta genome shotgun sequencing data).

idba

ilabdb

The analysis flow of iLABdb

instrain

Bioinformatics program inStrain

iom

Trend in microbiology

kraken2

The second version of the Kraken taxonomic sequence classification system

lagbasedresponderidentifier

ldm

A linear decomposition model for testing microbiome association and mediation

map2b

megahit

Ultra-fast and memory-efficient (meta-)genome assembler

metagenome

Metagenome analysis pipeline

metaphlan

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

metapop

A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations

metatime

MetaTiME: Meta-components in Tumor immune MicroEnvironment

meta_snv_2157

mg-rast

The MG-RAST Backend -- the API server