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2brad-m

2bRAD-M

aro

The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of an antibiotic

bam2fastq

Simple convertor from bam to FASTQ

bash2048

Bash implementation of 2048 game

batch_server

batter

beautiful-visualization-with-r

《R语言数据可视化之美》配套代码

bigg2020_cracknag

biobakery

bioBakery tools for meta'omic profiling

bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

bwa-mem2

bwa-mem2

carnelian

carveme

CarveMe: genome-scale metabolic model reconstruction

cerebro-paper

Automated next-generation profiling of genomic alterations in human cancers

chatgpt

ChatGPT

checkm2

Assessing the quality of metagenome-derived genome bins using machine learning

chm13

The complete sequence of a human genome

conditionallyraretaxa

R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities

cooccurrence

Supplementary data for co-occurrence manuscript

copd_multiomics

This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interaction in Chronic Obstructive Pulmonary Disease'.

crc-cohort-hainan-china

R code for shotgun metagenomic sequences of CRC patient and healthy cohorts from Hainan, China

crc-snp

Establishing a novel colorectal cancer prediction model based on unique microbial single nucleotide variants markers

crossranger

RF

curatedmetagenomicdata

Curated and processed metagenomic data through ExperimentHub

decontam

DNA concentration and negative control

defense-finder

Systematic search of all known anti-phage systems.

defense-finder-models

MacSyFinder models allowing for a systematic search of anti-phage systems

dietstudy_analyses

eukdetect