Comments (2)
Sounds like you're most interested in https://github.com/dhimmel/integrate. This repo does the following:
download text files from the internet, parse/preprocess/unify/join the data using python scripts, and then inject into Neo4j?
Particularly, the integrate.ipynb
notebook will be of interest.
Note that most datasets don't come directly from the upstream resource, but rather an intermediate repo that performs pre-processing. In total, there's dozens of repositories that work together to create Hetionet, but the creation is all orchestrated in the dhimmel/integrate
repo.
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Awesome! Thank You.
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Related Issues (20)
- Local files HOT 2
- Multiple Match Queries Not Working HOT 2
- Question About Hetionet's Dictionary HOT 3
- How to add new disease and anatomy nodes HOT 2
- Providing a dump version of Hetionet HOT 11
- http://neo4j.het.io/browser/ time out HOT 4
- Neo4J instance down (?) HOT 7
- Updated TSV version HOT 6
- graph.db database offline in neo4j HOT 3
- neo4j website down HOT 6
- Hetionet Browser is down HOT 4
- Mapping to original databases HOT 2
- Cannot map non-existing file HOT 5
- Do any relations imply another relation? HOT 1
- Connectivity Search Automated Query Question HOT 8
- Docker compatibility question HOT 4
- Question on metrics HOT 1
- What does it mean if something up regulates a disease in this context? HOT 3
- Speeding up data import to Neo4j v5 and CSV format data HOT 2
- Inquiry about metapaths from 2017 Paper "Systematic Integration of Biomedical Knowledge Prioritizes Drugs for Repurposing" HOT 7
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