Comments (4)
Ah yes I see:
Database access not available. Please use
:server connect
to establish connection. There's a graph waiting for you.
It's probably the case that some part of the Neo4j instance is down but the part that returns the website is alive. Hence, you get the website without the database.
Let me tag @falquaddoomi. Perhaps we can add a health check that does a simple cypher query, to ensure the database is actually alive.
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So, I've restarted all the VMs and the managed database associated with the project, which seems to have fixed things for now. That was likely more than what was necessary to fix this issue, so I'll do some poking around to figure out what actually needs to be restarted when this database issue comes up. @dhimmel, that's a good idea about issuing a real query as the health check -- right now it just checks that the neo4j browser UI is accessible, which apparently isn't enough to determine that the service is working. I'll report in this issue once the health check is modified and I've verified that it stops this specific issue.
Longer-term, I'll carve out some time to investigate migrating to neo4j 4.x (right now we're one 3.5.12). I'll also continue to investigate right-sizing the hardware so the container doesn't have to be restarted at all, let alone every few days as it is now.
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The browser is down again.
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The browser is down again.
Argh! Thanks for the notification.
I'll carve out some time to investigate migrating to neo4j 4.x
I'll try to post an issue soon with the main things to be aware of for the upgrade to organize my thoughts from #33
I'll also continue to investigate right-sizing the hardware so the container doesn't have to be restarted at all
I suspect there's some sort of memory leak such that even the largest container might eventually break. It's also possible some users are submitting queries that end up exploding the instance.
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Related Issues (20)
- Local files HOT 2
- Multiple Match Queries Not Working HOT 2
- Question About Hetionet's Dictionary HOT 3
- How to add new disease and anatomy nodes HOT 2
- Providing a dump version of Hetionet HOT 11
- http://neo4j.het.io/browser/ time out HOT 4
- Neo4J instance down (?) HOT 7
- Updated TSV version HOT 6
- graph.db database offline in neo4j HOT 3
- neo4j website down HOT 6
- Mapping to original databases HOT 2
- Cannot map non-existing file HOT 5
- Do any relations imply another relation? HOT 1
- Connectivity Search Automated Query Question HOT 8
- Docker compatibility question HOT 4
- Question on metrics HOT 1
- What does it mean if something up regulates a disease in this context? HOT 3
- Speeding up data import to Neo4j v5 and CSV format data HOT 2
- Inquiry about metapaths from 2017 Paper "Systematic Integration of Biomedical Knowledge Prioritizes Drugs for Repurposing" HOT 7
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