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Harry Jubb's Projects

dpdb icon dpdb

PDB (Protein Data Bank) Parser in D.

dpocket_extractor icon dpocket_extractor

Runs dpocket to get pocket descriptors for a given set of atoms or residues

feature-viewer icon feature-viewer

A library to visualize protein sequence features in javascript using D3

fpocket icon fpocket

Fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software. If you are interested in integrating fpocket in an industrial setting and require official support, please contact Discngine (www.discngine.com).

freesasa icon freesasa

C-library for calculating Solvent Accessible Surface Areas

freesasa_docker icon freesasa_docker

Dockerfile for building FreeSASA [Simon Mitternacht (2016) FreeSASA: An open source C library for solvent accessible surface area calculation. F1000Research 5:189 (doi: 10.12688/f1000research.7931.1)]

glmol icon glmol

A molecular viewer written in Javascript and WebGL

harrypy icon harrypy

Useful bits of Python, reduce copy-pasting

iohook icon iohook

Node.js global keyboard and mouse listener.

jitsi-meet icon jitsi-meet

Jitsi Meet - Secure, Simple and Scalable Video Conferences that you use as a standalone app or embed in your web application.

joblog icon joblog

A parser for GNU Parallel --joblog files.

jronn icon jronn

Code to run the BioJava implementation of the JRONN protein disorder predictor

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