harishanand95 / jsrt-parser

This is a data parser to obtain images and descriptions from JSRT database in a uniform format for deep learning applications.

Hi there! 👋

jsrt-parser's Issues

size error

First of all
Thanks for your help, I could manage JSRT dataSet.

I try to crop the image by using yours but there is a problem
(I put all image into the All247images folder and CSV file into the Clinical_Information folder )

when i try your sample code below,

jsrtdata = Jsrt().load_images("./All247images/")
nodule_images = jsrtdata.get_images(num_of_images=1, has_nodule=True)

# crop out from image a picture of size 1200 at location 0,0 as center.
image = nodule_images[0].crop(1200, 0, 0)     

plt.imshow(image, cmap=plt.get_cmap('gray'))
plt.show()

I got an error like below
→　ValueError: cannot reshape array of size 851869 into shape (2048,2048)

The image that I have is also 2048*2048 size
Is there anything that I missed?