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microstates

A collection of algorithms for estimating microstates in EEG data, see newer version here: https://github.com/atpoulsen/Microstate-EEGlab-toolbox

mmvt

The Multi-Modality Visualization Tool (MMVT) is built for researchers who wish to have a better understanding of their neuroimaging anatomical and spatio-temporal data

modularity_algorithm_nn

Using this algorithm, one can extract the main brain modular structures ), which fluctuate over time during rest and task. . The proposed framework simply takes as input a set of connectivity matrices, without making any constraint on how these matrices are computed. Reference: Kabbara et al. 2019, Detecting modular brain states in rest and task, Network Neuroscience

nestedcvtraining

openneuro-py

A Python client for accessing OpenNeuro datasets.

osl-dynamics

Models for inferring dynamics in neuroimaging data.

ott

pdoc

Prognostication of chronic disorders of consciousness using resting state fMRI and clinical characteristics

postnatal_eeg_evolution

Evolution of quantitative EEG over the first few days of life for preterm (<32 weeks GA) infants

probabilistic_microstates

MATLAB code used for the Frontiers paper on probabilistic microstates by Dinov M and Leech R

psilocybin-microstates

Microstate analysis of EEG recording in psilocybin experiment

pycx

PyCX is a Python-based sample code repository for complex systems research and education.

pyspi

Comparative analysis of pairwise interactions in multivariate time series.

qeeg_feature_set

collection of quantitative features for neonatal EEG

quantifying-network-structural-dissimilarities

Quantifying structural dissimilarities in networks

raincloudplots-workshops

raincloudplots workshops

raincloudplots2

Code and tutorials to visualise your data that is both beautiful *and* statistically valid

siminet

To quantifying similarity between networks

slice_display

Slice Display is a MATLAB toolbox for visualizing fMRI data. It can make dual-coded images (simultaneous display of contrast estimate and unthreshold t-statistic maps) that show more and hide less.

thenotes

Lame notes on mathematics, physics and science.

trent

umap

Uniform Manifold Approximation and Projection