* using log directory ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/rpm/new/rpm.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.2.1 20210130 (Red Hat 10.2.1-11)
    GNU Fortran (GCC) 10.2.1 20210130 (Red Hat 10.2.1-11)
* running under: CentOS Linux 7 (Core)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘rpm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rpm’ version ‘0.7-1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rpm’ can be installed ... WARNING
Found the following significant warnings:
  /c4/home/henrik/repositories/matrixStats/revdep/library/rpm/RcppArmadillo/include/armadillo_bits/fn_reshape.hpp:63:13: warning: ‘arma::Mat<typename T1::elem_type> arma::reshape(const arma::Base<typename T1::elem_type, T1>&, arma::uword, arma::uword, arma::uword)’ is deprecated: don't use this form: it will be removed [-Wdeprecated-declarations]
  /c4/home/henrik/repositories/matrixStats/revdep/library/rpm/RcppArmadillo/include/armadillo_bits/fn_reshape.hpp:65:7: warning: ‘arma::Mat<typename T1::elem_type> arma::reshape(const arma::Base<typename T1::elem_type, T1>&, arma::uword, arma::uword, arma::uword)’ is deprecated: don't use this form: it will be removed [-Wdeprecated-declarations]
  /c4/home/henrik/repositories/matrixStats/revdep/library/rpm/RcppArmadillo/include/armadillo_bits/fn_reshape.hpp:74:9: warning: ‘arma::Mat<typename T1::elem_type> arma::reshape(const arma::Base<typename T1::elem_type, T1>&, arma::uword, arma::uword, arma::uword)’ is deprecated: don't use this form: it will be removed [-Wdeprecated-declarations]
See ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/rpm/new/rpm.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (GCC) 10.2.1 20210130 (Red Hat 10.2.1-11)’
* checking installed package size ... NOTE
  installed size is 11.6Mb
  sub-directories of 1Mb or more:
    libs  11.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... ERROR
  Running ‘tests.R’
Running the tests in ‘tests/tests.R’ failed.
Complete output:
  > 
  > library(testthat)
  > library(rpm)
  Loading required package: abind
  Loading required package: future
  Loading required package: doRNG
  Loading required package: foreach
  Loading required package: rngtools
  > 
  > test_check("rpm")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-fauxmatching.R:6:3'): rpm-fit ──────────────────────────────────
  <defunctError/error/condition>
  Error: [matrixStats] Please explicitly specify argument 'ties.method' when calling colRanks() and rowRanks() of matrixStats. This is because the current default ties.method="max" will eventually be updated to ties.method="average" in order to align with the default of base::rank()
  Backtrace:
      ▆
   1. └─rpm::rpm(...) at test-fauxmatching.R:6:3
   2.   └─rpm::rpm_MLPLE(...)
   3.     └─rpm:::rpm.bootstrap.small(...)
   4.       └─rpm::Gale_Shapley(...)
   5.         └─matrixStats::rowRanks(U)
   6.           └─matrixStats:::tiesMethodMissing()
   7.             └─base (local) action(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
* DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE