The jsp-gsi from hakaiinstitute

jsp-gsi's Introduction

# jsp-gsi
Genetic stock identification data from the Hakai Institute Juvenile Salmon Program

## Summary

A subset of juvenile sockeye salmon collected by the JSP are assigned a probability of originating from a freshwater system using genetic stock identification conducted at the Molecular Genetics Lab at the Pacific Biological Station in Nanaimo, BC. 

## Folders

Two folders exist for samples that have been analyzed against different genetic baselines. 'coastwide040118.bse baseline results' folder contains the most years of data. The 'coastwide
baseline results contains only results from 2022 and 2023 that used a smaller baseline to be comparable with the Pacific Salmon Commissions standard for in-season analyses.

## Files

The "all_years_combined_individual_ids.csv" file contains all years of available GSI data from the Hakai JSP using the coastwide040118 baseline.

"mskHAKAI_####_2022-##-##.xlsx" files are the component child files for each run of data through the stock ID software (CBAYES) that were combined to produce the 'combined_GSI.xlsx' file.

"DNA Backgrounder...doc" file contains information on how to interpret results as well as methods used.

## Methods

This is done in the molecular genetics lab at Fisheries and Oceans Canada's Pacific Biological Station.

## Reports

Stock Identification of Fraser River Sockeye Salmon Using Microsatellites and Major Histocompatibility Complex Variation: https://doi.org/10.1577/T04-001.1

## Resources

See the data dictionary file for a complete description of data variables, units and descriptions.

See the metadata record at https://doi.org/10.21966/9ktc-qm09

Data Management Plan: https://doi.org/10.48321/D1CW23

Hakai Institute Juvenile Salmon Program Time Series: https://doi.org/10.21966/1.566666

Molecular Genetics Lab Baseline Allele Frequencies: https://open.canada.ca/data/en/dataset/d15583ee-eb9c-4289-9e29-1c60fd3520d8

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