Name: Hesham M Abdullah
Type: User
Company: Michigan State University
Bio: A scientist with extensive expertise in computational biology and Bioinformatics skills for data management, data analysis, and data visualization.
Twitter: HeshamBiotech
Location: East Lansing, MI
Blog: https://www.linkedin.com/in/hesham-abdullah-40bab1190/
Hesham M Abdullah's Projects
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Differential gene expression analysis of TCGA dataset containing expression data for normal and kidney cancer cells
Analyzing COVID-19 publications and summarizing the publications across topics
Overpopulation is a real threat to humanity or a potential for development Egypt as a case study. A jupyter notebook for visualizing population growth and the correlation between it and other economic and environmental indicators
Demo for Github Intro video.
Making an analysis over the differentially expressed genes, given gene expression data for tumor and normal conditions, about 58 patients.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Config files for my GitHub profile.
RNA-seq processed data and analysis code for the paper: FOXM1 is a biomarker of resistance to PI3Kα inhibition in ER+ breast cancer that is detectable using metabolic imaging (Ros et al 2020).
Correlational Analysis of Histopathological Images with Proteomics and Transcriptomics Data in Ovarian Cancer
Galaxy tools for metabolomics maintained by Workflow4Metabolomics
Script repository for Gloss et al. 2021 "Genome-wide association mapping within a single Arabidopsis thaliana population reveals a richer genetic architecture for defensive metabolite diversity"