habiotech Goto Github PK

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

camelina-sativa-gene-expression-analysis

capstone_project

Differential gene expression analysis of TCGA dataset containing expression data for normal and kidney cancer cells

covid2019

Analyzing COVID-19 publications and summarizing the publications across topics

data-visualization-for-population-growth

Overpopulation is a real threat to humanity or a potential for development Egypt as a case study. A jupyter notebook for visualizing population growth and the correlation between it and other economic and environmental indicators

demo-repo

Demo for Github Intro video.

differentially-expressed-genes-analysis

Making an analysis over the differentially expressed genes, given gene expression data for tumor and normal conditions, about 58 patients.

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

habiotech

Config files for my GitHub profile.

hci011_rnaseq

RNA-seq processed data and analysis code for the paper: FOXM1 is a biomarker of resistance to PI3Kα inhibition in ER+ breast cancer that is detectable using metabolic imaging (Ros et al 2020).

tcga_ov_analysis

Correlational Analysis of Histopathological Images with Proteomics and Transcriptomics Data in Ovarian Cancer

tools-metabolomics

Galaxy tools for metabolomics maintained by Workflow4Metabolomics

toua_glucosinolate_gwas

Script repository for Gloss et al. 2021 "Genome-wide association mapping within a single Arabidopsis thaliana population reveals a richer genetic architecture for defensive metabolite diversity"

transreglipmet_camelinaseed