Comments (2)
since commit ab4548e both docker images are used to execute the workflow (vanilla jobs for time being)
from sv-callers.
since commit 9494a85 the workflow runs the SV callers on real data.
from sv-callers.
Related Issues (20)
- bwa-mem2 + multisample sv-calling and genotyping on non-human genomes HOT 1
- Compatibility for bwa-mem2 indexed fasta files HOT 1
- Error in rule delly_p using paired-sample SV calling HOT 2
- Java heap space error while running GRIDSS HOT 2
- Enable sv-callers in the workflow catalog
- Missing SV type parameter in DELLY filtering HOT 4
- Updating GRIDSS to a newer version HOT 4
- compile error HOT 12
- Use GitHub Container Registry instead of Docker Hub
- Incorrect sample wildcard(s) returned in survivor rules
- Incorrect sample wildcard(s) returned in delly rule
- Copy Number Calling HOT 1
- Integrate viola-sv into post-processing step
- Incorrect named wildcards reported in s/p modes
- VCF final outputs HOT 1
- Workflow fails to run due to recent incompatibility of dependencies
- bwa-mem2 compatibility HOT 1
- ModuleNotFoundError in line 7 of /home/mai/sv-callers/workflow/Snakefile HOT 1
- Sample entry question for germline anlaysis HOT 1
- Error in running analysis.yml HOT 1
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from sv-callers.