Comments (1)
Hi,
Could you share the version of the workflow instance used? Note that the older versions relied merely on SURVIVOR but the more recent version (>=1.2) makes use of Viola-SV to merge/harmonize the output files of the different callers into the final all.vcf
. Perhaps you could find some clues in the GH issues of the corresponding post-processing SV tool.
from sv-callers.
Related Issues (20)
- empty output HOT 10
- bwa-mem2 + multisample sv-calling and genotyping on non-human genomes HOT 1
- Compatibility for bwa-mem2 indexed fasta files HOT 1
- Error in rule delly_p using paired-sample SV calling HOT 2
- Java heap space error while running GRIDSS HOT 2
- Enable sv-callers in the workflow catalog
- Missing SV type parameter in DELLY filtering HOT 4
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- compile error HOT 12
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from sv-callers.