Comments (4)
Unfortunately DeepVariant only works with python 2.7 right now. We can look into making this work with Python 3 but it's likely to take a bit of time. How critical is it for you to use python 3? More information will help us prioritize python 3 support.
from deepvariant.
Thank you for your answer. Python 3 is not critical at the moment. I might have missed it but it would be good to mention this in the doc?
from deepvariant.
That's good to know. I'm put in a PR in our internal systems adding a note about Python 2.7 being required. The docs should show up on our next sync to github.
from deepvariant.
Thank you!
from deepvariant.
Related Issues (20)
- Errors on testing DeepTrio on PacBio samples HOT 4
- Error on testing deepvariant for WES HOT 5
- splitting bam for deepvariant input HOT 5
- /opt/deepvariant/bin/deeptrio/run_deeptrio: No such file or directory HOT 6
- Issue with running docker image HOT 8
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- Using PAR region flag seems to log NativeBedReader endlessly HOT 5
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- Representation of hemizygous genotypes as homozygous when using --haploid_contigs in postprocess_variants HOT 2
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- docker pull from google/deepvariant:1.6.0-gpu ,but the python version is 3.11 and the proto file cannot import HOT 2
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- Updates to underlying tools in docker HOT 2
- Debug source code, but bazel compilation has some problems HOT 10
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- GPU with less than 16GB memory HOT 3
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