Exporting FASTA per selected region, not per scaffold. about apollo

[S2KFan]

Nope, not possible. WebApollo's SequenceTrack does not inherit from
JBrowse's Sequence, so any functionality from Sequence would have to be
ported over to WebApollo's. Would require some work, might add that in the
future.

On Wed, Apr 2, 2014 at 12:27 PM, Monica Munoz-Torres <
[email protected]> wrote:

I may have misunderstood this, but I thought this was already possible? If
so, how?
I am re-opening an issue, just to make sure.

cheers,
~moni.

Anthony Bretaudeau wrote (March 3, 2014):
"On WebApollo, when I zoom to a specific region, I would like to be able
to extract the fasta sequence corresponding to the selected region.
This is possible in JBrowse by clicking on the Reference Sequence track
menu -> "Save track data " and selecting the FASTA format.
Is there a way to do it in WebApollo? The only formats available in the
"Save Track data" dialog are GFF3, BED and Sequin Table"

Ed Lee responded:
"We currently don't have that functionality in WebApollo. WebApollo's
reference sequence track is quite different than JBrowse's reference
sequence track so they have different functionality. We can look into
porting that functionality for a future release."

Reply to this email directly or view it on GitHubhttps://github.com//issues/4
.

[nathandunn]

Fixed here: #1192