giuseppetotaro / ctakes-clinical-pipeline Goto Github PK

Right now one needs to statically define the explicit pipeline they wish to use e.g.

CTAKESClinicalPipelineFactory.getDefaultPipeline();

It would be better if I could do

CTAKESClinicalPipelineFactory.getPipelineForProperty(properties.get("ctakes.pipeline"));

This would mean I can adapt my application easily to select fast pipeline, default, pipeline, etc.

Hi @giuseppetotaro if it is OK with you I would like to publish this artifact on to Maven Central tomorrow.
It is a burden for me when the dependencies cannot be obtained transitively.
I'll keep this issue updated and will let you know what is going on. Nice work here Sir. :)

Hi,
I have an issue when running the shell script. Please find the error below.
Error: does not exist. Please provide the jar that contains CTAKESClinicalPipelineFactory class.
Another doubt is whether the jar file is the same as the SNAPSHOT.jar inside the target folder?
PS : I am running ctakes version 4.x.
Please help me sort this out. Thanks in advance :-)

Hi @giuseppetotaro can you please grant me as a project collaborator? I am ready to push this module to Maven Central.
Thank you very much in advance.

In CTAKESClinicalPipelineFactory.java, this line overwrites the input file with xml output:
Line 237 aed.toXML(new FileWriter(args[0]));

Is it possible to add a custom dictionary? For instance, I would like occurrences of VA in the text to be mapped to Visual Acuity?