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License: GNU General Public License v3.0
Code for DeProt. A protein language model with quantizied structure and disentangled attention
License: GNU General Public License v3.0
Are there any scripts available to get representations/embeddings for a given sequence/structure?
Hi,
First of all, thanks for the paper and for sharing the code - it seems like a novel and effective approach for discretizing structural elements. The zero shot performance on ProteinGym is impressive!
I am running into speed issues when I run the PDB quantizer. For now, it seems very slow when quantizing large structures. Would it be possible to move parts of the quantization step to GPU/CUDA to speed up?
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