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dybaorf

Dymanically Balanced Online Random Forest

endocal

A cross-platform, compact GUI application for the optical distortion calibration of fluid-immersed endoscopes

fetal_brain_seg

A toolkit for fetal brain localization and segmentation using deep learning

fetalbrainparcellation

A tool for the automatic segmentation of fetal brain 3D T2-weighted MRI

fetalbrainsegmentation_monai

Tool for fetal brain segmentation in MRI

gift-grab

An open-source C++ and Python API for acquiring, processing and encoding video streams in real time. Supports several frame-grabber cards, standard-compliant network streams and video files. Python API is compatible with NumPy and SciPy.

giftcloudserverbuilder

GIFT-Cloud's customised fork of xnatbuilder, used to set up a GIFT-Cloud server

giftcloudservermodule

GIFT-Cloud's customised server module, used to customise a GIFT-Cloud server

giftclouduploader

A Java Web Start application for anonymising and uploading DICOM data to a GIFT-Cloud or XNAT server

highres3dnet

itk_niftymic

This repository contains numerous additional filters and functions to extend the standard (Wrap)ITK Release 4.13. It is a necessary requirement in order to use NiftyMIC and related toolkits.

lie_exponential

Numerical computation of the Lie exponential for stationary velocity fields.

monaifbs

mrimultiatlasforneonatalrabbitbrain

Code for the benchmarking and validation of the Neonatal Rabbit brain Multi-Atlas

niftymatch

A library featuring GPU implementations of feature detection and matching algorithms.

niftymic

NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.

nsol

The Numerical Solver Library (NSoL) is a research-focused toolkit for denoising and deconvolution applications using ADMM and Primal-Dual methods.

puma

Python Unified Multi-tasking API (PUMA)

pysitk

PySiTK is a research-focused toolkit containing a collection of Python helper functions. In particular it facilitates the interaction between SimpleITK and ITK.

rabbitbrainanalysis

Full pipeline for processing, segmentation and data analysis of a rabbit brain scan. See also https://www.sciencedirect.com/science/article/pii/S1053811918305366?via%3Dihub

simplereg

SimpleReg is a research-focused toolkit that provides tools helpful for (medical) image registration and processing.

slicseg

An API and GUI application for semi-automated interactive segmentation of medical images.

spot-a-neonatalrabbit

Segmentation Propagation on Target (...as a Neonatal Rabbit)

vessel-tools

Scripts and utility programs for extracting and processing vasculature

volumetricreconstructionfromprintedfilms

A research-focused toolkit developed within the GIFT-Surg project to reconstruct a volumetric representation from printed brain MR films.

xono2l

LabVIEW-compatible, extensible C++ API for capturing live ultrasound streams