For inter-rater agreements for experimental data with missing values, Krippendorff's alpha coefficient has been established as a standard measure. This a very general implementation in the Python programming language, allowing the use of arbitrary metrics. It is also accelerated for some standard metrics that allow vector math (through Numerical Python) -- currently nominal, interval and rational metrics.
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Python implementation of Krippendorff's alpha -- inter-rater reliability
License: GNU General Public License v3.0