Production server at https://notebooks.gesis.org.
Test server at https://notebooks-test.gesis.org.
Developer documentation at https://gesiscss.github.io/orc2/.
Primary: https://git.gesis.org/ilcm/orc2
Mirror: https://github.com/gesiscss/orc2
Open Research Computing v2
Home Page: https://notebooks.gesis.org/
License: MIT License
Production server at https://notebooks.gesis.org.
Test server at https://notebooks-test.gesis.org.
Developer documentation at https://gesiscss.github.io/orc2/.
Primary: https://git.gesis.org/ilcm/orc2
Mirror: https://github.com/gesiscss/orc2
@minrk the binder pod log shows
[E 230427 11:46:49 ioloop:760] Exception in callback functools.partial(<bound method IOLoop._discard_future_result of <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7efe39274d90>>, <Task finished name='Task-3705' coro=<Launcher.launch.<locals>.handle_chunk() done, defined at /usr/local/lib/python3.11/site-packages/binderhub/launcher.py:279> exception=Finish()>)
Traceback (most recent call last):
File "/usr/local/lib/python3.11/site-packages/binderhub/builder.py", line 159, in emit
await self.flush()
tornado.iostream.StreamClosedError: Stream is closed
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.11/site-packages/tornado/ioloop.py", line 740, in _run_callback
ret = callback()
^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/tornado/ioloop.py", line 764, in _discard_future_result
future.result()
File "/usr/local/lib/python3.11/site-packages/binderhub/launcher.py", line 291, in handle_chunk
await event_callback(event)
File "/usr/local/lib/python3.11/site-packages/binderhub/builder.py", line 630, in handle_progress_event
await self.emit(
File "/usr/local/lib/python3.11/site-packages/binderhub/builder.py", line 163, in emit
raise Finish()
tornado.web.Finish
[E 230427 11:46:49 ioloop:760] Exception in callback functools.partial(<bound method IOLoop._discard_future_result of <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7efe39274d90>>, <Task finished name='Task-3706' coro=<Launcher.launch.<locals>.handle_chunk() done, defined at /usr/local/lib/python3.11/site-packages/binderhub/launcher.py:279> exception=Finish()>)
Traceback (most recent call last):
File "/usr/local/lib/python3.11/site-packages/binderhub/builder.py", line 159, in emit
await self.flush()
tornado.iostream.StreamClosedError: Stream is closed
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.11/site-packages/tornado/ioloop.py", line 740, in _run_callback
ret = callback()
^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/tornado/ioloop.py", line 764, in _discard_future_result
future.result()
File "/usr/local/lib/python3.11/site-packages/binderhub/launcher.py", line 291, in handle_chunk
Do you knwo what it could be?
I try to construct a direct launch link as instructed by the FAQ:
https://notebooks.gesis.org/binder/v2/gh/illinois-ceesd/NCSA-WEST/HEAD
However the page at which I arrive only tells me: "Failed to connect to event stream". The same repo, launched via manual input on the front page launches just fine. What am I missing? Thanks in advance for the help, and thanks for hosting GESIS notebooks. (I do admit I'm not a social scientist... but I do work at a university. I hope that counts? 🙂 )
[W 2023-04-28 08:57:40.145 JupyterHub base:1030] 2 consecutive spawns failed. Hub will exit if failure count reaches 5 before succeeding
[E 2023-04-28 08:57:40.145 JupyterHub gen:630] Exception in Future <Task finished name='Task-15076' coro=<BaseHandler.spawn_single_user.<locals>.finish_user_spawn() done, defined at /usr/local/lib/python3.9/site-packages/jupyterhub/handlers/base.py:954> exception=TimeoutError('pod gesis/jupyter-astrobiomike-2dbinder-2dr-2dbasics-2djff8k1ry did not start in 300 seconds!')> after timeout
Traceback (most recent call last):
File "/usr/local/lib/python3.9/site-packages/tornado/gen.py", line 625, in error_callback
future.result()
File "/usr/local/lib/python3.9/site-packages/jupyterhub/handlers/base.py", line 961, in finish_user_spawn
await spawn_future
File "/usr/local/lib/python3.9/site-packages/jupyterhub/user.py", line 850, in spawn
raise e
File "/usr/local/lib/python3.9/site-packages/jupyterhub/user.py", line 747, in spawn
url = await gen.with_timeout(timedelta(seconds=spawner.start_timeout), f)
File "/usr/local/lib/python3.9/site-packages/kubespawner/spawner.py", line 2732, in _start
await exponential_backoff(
File "/usr/local/lib/python3.9/site-packages/jupyterhub/utils.py", line 236, in exponential_backoff
raise asyncio.TimeoutError(fail_message)
asyncio.exceptions.TimeoutError: pod gesis/jupyter-astrobiomike-2dbinder-2dr-2dbasics-2djff8k1ry did not start in 300 seconds!
@minrk should I report this upstream to JupyterHub?
repo2docker failed to build https://github.com/gesiscss/orc2-test-build.
Waiting for build to start...
Picked Git content provider.
Cloning into '/tmp/repo2docker4np30dll'...
HEAD is now at dfd0418 Create main.txt
failed to create fsnotify watcher: too many open files
repo2docker build container successfuly.
URL
with https://github.com/gesiscss/orc2-test-buildlaunch
URL
with https://github.com/gesiscss/orc2-test-buildlaunch
resulted in no issue.
I saw the following a couple of times in JupyterHub logs:
[W 2023-04-28 08:55:19.973 JupyterHub user:824] petlja-analizapodatakagim2-zj9cxrbg's server failed to start in 300 seconds, giving up.
Common causes of this timeout, and debugging tips:
1. Everything is working, but it took too long.
To fix: increase `Spawner.start_timeout` configuration
to a number of seconds that is enough for spawners to finish starting.
2. The server didn't finish starting,
or it crashed due to a configuration issue.
Check the single-user server's logs for hints at what needs fixing.
https://notebooks.gesis.org/binder/health returns
{"ok": true, "checks": [{"service": "Docker registry", "ok": true}, {"service": "JupyterHub API", "ok": true}, {"service": "Pod quota", "total_pods": 70, "build_pods": 9, "user_pods": 61, "quota": 120, "ok": true, "_ignore_failure": true}]}
For https://notebooks.gesis.org/binder/v2/gh/socialcomquant/css_methods_python_workshop/HEAD
Found built image, launching...
Launching server...
Server requested
2023-05-03T17:51:34.250477Z [Normal] Successfully assigned gesis/jupyter-socialcomquant-2d-2dpython-5fworkshop-2d2snkwx5o to spko-css-app03
2023-05-03T17:51:35Z [Normal] Container image "jupyterhub/k8s-network-tools:2.0.0" already present on machine
2023-05-03T17:51:35Z [Normal] Created container block-cloud-metadata
2023-05-03T17:51:35Z [Normal] Started container block-cloud-metadata
2023-05-03T17:51:36Z [Normal] Pulling image "gesiscss/binder-r2d-g5b5b759-socialcomquant-2dcss-5fmethods-5fpython-5fworkshop-07544b:c676e582f426545ad89a916c28d9ae2a2927caa5"
2023-05-03T17:51:47Z [Warning] Failed to pull image "gesiscss/binder-r2d-g5b5b759-socialcomquant-2dcss-5fmethods-5fpython-5fworkshop-07544b:c676e582f426545ad89a916c28d9ae2a2927caa5": rpc error: code = Unknown desc = failed to pull and unpack image "docker.io/gesiscss/binder-r2d-g5b5b759-socialcomquant-2dcss-5fmethods-5fpython-5fworkshop-07544b:c676e582f426545ad89a916c28d9ae2a2927caa5": failed to copy: httpReadSeeker: failed open: unexpected status code https://registry-1.docker.io/v2/gesiscss/binder-r2d-g5b5b759-socialcomquant-2dcss-5fmethods-5fpython-5fworkshop-07544b/manifests/sha256:47987f82a70799e392db0a972cfe99ee166242addc55755e927dbc098a312d54: 429 Too Many Requests - Server message: toomanyrequests: You have reached your pull rate limit. You may increase the limit by authenticating and upgrading: https://www.docker.com/increase-rate-limit
2023-05-03T17:51:47Z [Warning] Error: ErrImagePull
2023-05-03T17:51:48Z [Normal] Back-off pulling image "gesiscss/binder-r2d-g5b5b759-socialcomquant-2dcss-5fmethods-5fpython-5fworkshop-07544b:c676e582f426545ad89a916c28d9ae2a2927caa5"
2023-05-03T17:51:48Z [Warning] Error: ImagePullBackOff
In the GESIS Notebooks FAQ (https://notebooks.gesis.org/faq.html) the persistent Notebook option: "https://notebooks.gesis.org/services/binder/v2/gh/github_account_name/repository_name/HEAD" does not work.
gh/arnimtest/PHYS2015_2023/HEAD
Waiting for build to start...
Picked Git content provider.
Cloning into '/tmp/repo2dockeryvjnszfy'...
HEAD is now at 5dafaa7 added question on dominant component of spectrum
Building conda environment for python=3.9
Using CondaBuildPack builder
Step 1/50 : FROM docker.io/library/buildpack-deps:bionic
---> 0f137f206fa8
Step 2/50 : ENV DEBIAN_FRONTEND=noninteractive
---> Using cache
---> 5adb5d4213f3
Step 3/50 : RUN apt-get -qq update && apt-get -qq install --yes --no-install-recommends locales > /dev/null && apt-get -qq purge && apt-get -qq clean && rm -rf /var/lib/apt/lists/*
---> Using cache
---> 3f73fc804dae
Step 4/50 : RUN echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && locale-gen
---> Using cache
---> cc154af39a10
Step 5/50 : ENV LC_ALL=en_US.UTF-8 LANG=en_US.UTF-8 LANGUAGE=en_US.UTF-8
---> Using cache
---> 6eddaa9e4a0f
Step 6/50 : ENV SHELL=/bin/bash
---> Using cache
---> 0ec930b315d1
Step 7/50 : ARG NB_USER
---> Using cache
---> 0b1fdf7dc1a6
Step 8/50 : ARG NB_UID
---> Using cache
---> 808e307d5962
Step 9/50 : ENV USER=${NB_USER} HOME=/home/${NB_USER}
---> Using cache
---> 99c51a4ef002
Step 10/50 : RUN groupadd --gid ${NB_UID} ${NB_USER} && useradd --comment "Default user" --create-home --gid ${NB_UID} --no-log-init --shell /bin/bash --uid ${NB_UID} ${NB_USER}
---> Using cache
---> 55c36f280197
Step 11/50 : RUN apt-get -qq update && apt-get -qq install --yes --no-install-recommends gettext-base less unzip > /dev/null && apt-get -qq purge && apt-get -qq clean && rm -rf /var/lib/apt/lists/*
---> Using cache
---> 9976c2a6dd60
Step 12/50 : EXPOSE 8888
---> Using cache
---> 1e3b2169dcd2
Step 13/50 : ENV APP_BASE=/srv
---> Using cache
---> 070d1f82f7d8
Step 14/50 : ENV CONDA_DIR=${APP_BASE}/conda
---> Using cache
---> 0789f5d70008
Step 15/50 : ENV NB_PYTHON_PREFIX=${CONDA_DIR}/envs/notebook
---> Using cache
---> 89e05983b3d4
Step 16/50 : ENV NPM_DIR=${APP_BASE}/npm
---> Using cache
---> d9ab9faeede3
Step 17/50 : ENV NPM_CONFIG_GLOBALCONFIG=${NPM_DIR}/npmrc
---> Using cache
---> 5333033100a9
Step 18/50 : ENV NB_ENVIRONMENT_FILE=/tmp/env/environment.lock
---> Using cache
---> 87b6194588b4
Step 19/50 : ENV MAMBA_ROOT_PREFIX=${CONDA_DIR}
---> Using cache
---> ccc3cc01fd42
Step 20/50 : ENV MAMBA_EXE=${CONDA_DIR}/bin/mamba
---> Using cache
---> a99a3e8425e5
Step 21/50 : ENV CONDA_PLATFORM=linux-64
---> Using cache
---> 3801a3a9ba44
Step 22/50 : ENV KERNEL_PYTHON_PREFIX=${NB_PYTHON_PREFIX}
---> Using cache
---> 6f08e6d75dc4
Step 23/50 : ENV PATH=${NB_PYTHON_PREFIX}/bin:${CONDA_DIR}/bin:${NPM_DIR}/bin:${PATH}
---> Using cache
---> 48b7e0dcee04
Step 24/50 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2factivate-2dconda-2esh-44e764 /etc/profile.d/activate-conda.sh
---> Using cache
---> f65ff4395ebe
Step 25/50 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2fenvironment-2epy-2d3-2e9-2dlinux-2d64-2elock-3652dd /tmp/env/environment.lock
---> Using cache
---> 280a861b85b9
Step 26/50 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2finstall-2dbase-2denv-2ebash-e5509f /tmp/install-base-env.bash
---> Using cache
---> 91cb5c1566c3
Step 27/50 : RUN TIMEFORMAT='time: %3R' bash -c 'time /tmp/install-base-env.bash' && rm -rf /tmp/install-base-env.bash /tmp/env
---> Using cache
---> 03f023cf8458
Step 28/50 : RUN mkdir -p ${NPM_DIR} && chown -R ${NB_USER}:${NB_USER} ${NPM_DIR}
---> Using cache
---> c1c97c7ae67f
Step 29/50 : USER root
---> Using cache
---> c346d5c23480
Step 30/50 : ARG REPO_DIR=${HOME}
---> Using cache
---> d69cc60b9605
Step 31/50 : ENV REPO_DIR=${REPO_DIR}
---> Using cache
---> 015782bd9de2
Step 32/50 : RUN if [ ! -d "${REPO_DIR}" ]; then /usr/bin/install -o ${NB_USER} -g ${NB_USER} -d "${REPO_DIR}"; fi
---> Using cache
---> 993a8c553601
Step 33/50 : WORKDIR ${REPO_DIR}
---> Using cache
---> df8fa9dcbc76
Step 34/50 : RUN chown ${NB_USER}:${NB_USER} ${REPO_DIR}
---> Using cache
---> 684384e6a516
Step 35/50 : ENV PATH=${HOME}/.local/bin:${REPO_DIR}/.local/bin:${PATH}
---> Using cache
---> 597e3f89e235
Step 36/50 : ENV CONDA_DEFAULT_ENV=${KERNEL_PYTHON_PREFIX}
---> Using cache
---> 7f4db92a75fa
Step 37/50 : COPY --chown=1000:1000 src/environment.yml ${REPO_DIR}/environment.yml
---> ba0e9a880323
Step 38/50 : USER ${NB_USER}
---> Running in 2cd99d86d9e8
Removing intermediate container 2cd99d86d9e8
---> fb3326ec4fc7
Step 39/50 : RUN TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '
---> Running in 048b18990976
Looking for: ['python=3.9', "fermitools[version='>=2.2.0']", 'healpy', 'gammapy', 'pip']
Transaction
Prefix: /srv/conda/envs/notebook
Updating specs:
- fermitools[version='>=2.2.0']
- healpy
- gammapy
- python=3.9
- pip
Package Version Build Channel Size
───────────────────────────────────────────────────────────────────────────────────────────
Install:
───────────────────────────────────────────────────────────────────────────────────────────
+ clhep 2.4.5.3 h27087fc_0 conda-forge 39MB
+ zstd 1.5.5 hfc55251_0 conda-forge 545kB
+ keyutils 1.6.1 h166bdaf_0 conda-forge 118kB
+ libgfortran5 13.2.0 ha4646dd_0 conda-forge 1MB
+ f2c 20210323183018 h166bdaf_1010 conda-forge 281kB
+ alsa-lib 1.2.9 hd590300_0 conda-forge 547kB
+ libexpat 2.5.0 hcb278e6_1 conda-forge 78kB
+ xorg-libice 1.1.1 hd590300_0 conda-forge 58kB
+ gettext 0.21.1 h27087fc_0 conda-forge 4MB
+ xorg-libxau 1.0.11 hd590300_0 conda-forge 14kB
+ libiconv 1.17 h166bdaf_0 conda-forge 1MB
+ c-ares 1.20.1 hd590300_0 conda-forge 115kB
+ libev 4.33 h516909a_1 conda-forge 106kB
+ pcre2 10.40 hc3806b6_0 conda-forge 2MB
+ libogg 1.3.4 h7f98852_1 conda-forge 211kB
+ libopus 1.3.1 h7f98852_1 conda-forge 261kB
+ libpng 1.6.39 h753d276_0 conda-forge 283kB
+ pixman 0.42.2 h59595ed_0 conda-forge 385kB
+ xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge 30kB
+ libjpeg-turbo 2.1.5.1 hd590300_1 conda-forge 496kB
+ nspr 4.35 h27087fc_0 conda-forge 227kB
+ lerc 4.0.0 h27087fc_0 conda-forge 282kB
+ libdeflate 1.19 hd590300_0 conda-forge 67kB
+ libwebp-base 1.3.2 hd590300_0 conda-forge 402kB
+ lz4-c 1.9.4 hcb278e6_0 conda-forge 143kB
+ lame 3.100 h166bdaf_1003 conda-forge 508kB
+ mpg123 1.32.3 h59595ed_0 conda-forge 492kB
+ attr 2.5.1 h166bdaf_1 conda-forge 71kB
+ libedit 3.1.20191231 he28a2e2_2 conda-forge 124kB
+ graphite2 1.3.13 h58526e2_1001 conda-forge 105kB
+ cppunit 1.15.1 h9c3ff4c_0 conda-forge 273kB
+ xorg-renderproto 0.11.1 h7f98852_1002 conda-forge 10kB
+ xorg-kbproto 1.0.7 h7f98852_1002 conda-forge 27kB
+ xorg-xproto 7.0.31 h7f98852_1007 conda-forge 75kB
+ xorg-xf86vidmodeproto 2.3.1 h7f98852_1002 conda-forge 24kB
+ pthread-stubs 0.4 h36c2ea0_1001 conda-forge 6kB
+ xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge 19kB
+ mysql-common 8.0.33 hf1915f5_5 conda-forge 758kB
+ libevent 2.1.12 hf998b51_1 conda-forge 427kB
+ libssh2 1.11.0 h0841786_0 conda-forge 271kB
+ libgfortran-ng 13.2.0 h69a702a_0 conda-forge 23kB
+ expat 2.5.0 hcb278e6_1 conda-forge 137kB
+ xorg-libsm 1.2.4 h7391055_0 conda-forge 27kB
+ libgpg-error 1.47 h71f35ed_0 conda-forge 261kB
+ libxml2 2.11.5 h0d562d8_0 conda-forge 705kB
+ libnghttp2 1.52.0 h61bc06f_0 conda-forge 622kB
+ libglib 2.78.0 hebfc3b9_0 conda-forge 3MB
+ libvorbis 1.3.7 h9c3ff4c_0 conda-forge 286kB
+ libflac 1.4.3 h59595ed_0 conda-forge 394kB
+ freetype 2.12.1 h267a509_2 conda-forge 635kB
+ nss 3.94 h1d7d5a4_0 conda-forge 2MB
+ libtiff 4.6.0 h29866fb_1 conda-forge 277kB
+ libcap 2.69 h0f662aa_0 conda-forge 101kB
+ krb5 1.21.2 h659d440_0 conda-forge 1MB
+ libxcb 1.15 h0b41bf4_0 conda-forge 384kB
+ mysql-libs 8.0.33 hca2cd23_5 conda-forge 2MB
+ libopenblas 0.3.24 pthreads_h413a1c8_0 conda-forge 5MB
+ fftw 3.3.10 nompi_hc118613_108 conda-forge 2MB
+ libgcrypt 1.10.1 h166bdaf_0 conda-forge 720kB
+ libllvm15 15.0.7 h5cf9203_3 conda-forge 33MB
+ dbus 1.13.6 h5008d03_3 conda-forge 619kB
+ glib-tools 2.78.0 hfc55251_0 conda-forge 112kB
+ libsndfile 1.2.2 hc60ed4a_1 conda-forge 354kB
+ fontconfig 2.14.2 h14ed4e7_0 conda-forge 272kB
+ lcms2 2.15 h7f713cb_2 conda-forge 241kB
+ openjpeg 2.5.0 h488ebb8_3 conda-forge 357kB
+ libpq 15.4 hfc447b1_2 conda-forge 3MB
+ libcups 2.3.3 h4637d8d_4 conda-forge 5MB
+ libcurl 8.4.0 hca28451_0 conda-forge 386kB
+ xcb-util-wm 0.4.1 h8ee46fc_1 conda-forge 52kB
+ xcb-util-keysyms 0.4.0 h8ee46fc_1 conda-forge 14kB
+ xcb-util 0.4.0 hd590300_1 conda-forge 20kB
+ xorg-libx11 1.8.7 h8ee46fc_0 conda-forge 829kB
+ xcb-util-renderutil 0.3.9 hd590300_1 conda-forge 17kB
+ libblas 3.9.0 18_linux64_openblas conda-forge 15kB
+ libsystemd0 254 h3516f8a_0 conda-forge 400kB
+ libclang13 15.0.7 default_h9986a30_3 conda-forge 10MB
+ xerces-c 3.2.4 h8d71039_2 conda-forge 2MB
+ cfitsio 4.1.0 hd9d235c_0 conda-forge 1MB
+ xcb-util-image 0.4.0 h8ee46fc_1 conda-forge 24kB
+ pgplot 5.2.2 hf4b3394_1008 conda-forge 270kB
+ xkeyboard-config 2.40 hd590300_0 conda-forge 896kB
+ xorg-libxext 1.3.4 h0b41bf4_2 conda-forge 50kB
+ xorg-libxrender 0.9.11 hd590300_0 conda-forge 38kB
+ libcblas 3.9.0 18_linux64_openblas conda-forge 14kB
+ liblapack 3.9.0 18_linux64_openblas conda-forge 14kB
+ pulseaudio-client 16.1 hb77b528_5 conda-forge 755kB
+ libclang 15.0.7 default_h7634d5b_3 conda-forge 133kB
+ healpix_cxx 3.31 h268b298_1007 conda-forge 621kB
+ wcslib 7.12 h6195f97_0 conda-forge 1MB
+ libxkbcommon 1.6.0 h5d7e998_0 conda-forge 573kB
+ gsl 2.7 he838d99_0 conda-forge 3MB
+ fermitools-data 0.18 0 fermi 497MB
+ font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge 397kB
+ font-ttf-inconsolata 3.000 h77eed37_0 conda-forge 97kB
+ font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge 701kB
+ font-ttf-ubuntu 0.83 hab24e00_0 conda-forge 2MB
+ fonts-conda-forge 1 0 conda-forge 4kB
+ ply 3.11 py_1 conda-forge 45kB
+ toml 0.10.2 pyhd8ed1ab_0 conda-forge 18kB
+ iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge 11kB
+ pluggy 1.3.0 pyhd8ed1ab_0 conda-forge 23kB
+ colorama 0.4.6 pyhd8ed1ab_0 conda-forge 25kB
+ munkres 1.1.4 pyh9f0ad1d_0 conda-forge 12kB
+ pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge 90kB
+ cycler 0.12.1 pyhd8ed1ab_0 conda-forge 13kB
+ annotated-types 0.6.0 pyhd8ed1ab_0 conda-forge 17kB
+ importlib-resources 5.12.0 pyhd8ed1ab_0 conda-forge 9kB
+ click 8.1.7 unix_pyh707e725_0 conda-forge 84kB
+ fonts-conda-ecosystem 1 0 conda-forge 4kB
+ pytest 7.4.2 pyhd8ed1ab_0 conda-forge 245kB
+ pytest-runner 6.0.0 pyhd8ed1ab_0 conda-forge 11kB
+ numpy 1.26.0 py39h474f0d3_0 conda-forge 7MB
+ unicodedata2 15.1.0 py39hd1e30aa_0 conda-forge 374kB
+ glib 2.78.0 hfc55251_0 conda-forge 491kB
+ pillow 10.0.1 py39h444a776_1 conda-forge 46MB
+ kiwisolver 1.4.5 py39h7633fee_1 conda-forge 73kB
+ pmw 2.0.1 py39hf3d152e_1008 conda-forge 524kB
+ pydantic-core 2.10.1 py39h9fdd4d6_0 conda-forge 2MB
+ sip 6.7.11 py39h3d6467e_1 conda-forge 490kB
+ cairo 1.16.0 hbbf8b49_1016 conda-forge 1MB
+ contourpy 1.1.1 py39h7633fee_1 conda-forge 224kB
+ pyerfa 2.0.0.3 py39h44dd56e_1 conda-forge 354kB
+ scipy 1.11.3 py39h474f0d3_1 conda-forge 15MB
+ iminuit 2.24.0 py39h3d6467e_0 conda-forge 413kB
+ fonttools 4.43.1 py39hd1e30aa_0 conda-forge 2MB
+ gstreamer 1.22.5 h98fc4e7_0 conda-forge 2MB
+ pyqt5-sip 12.12.2 py39h3d6467e_5 conda-forge 85kB
+ harfbuzz 7.3.0 hdb3a94d_0 conda-forge 1MB
+ astropy 5.3.4 py39h44dd56e_2 conda-forge 8MB
+ matplotlib-base 3.8.0 py39he9076e7_1 conda-forge 7MB
+ gst-plugins-base 1.22.5 hf7dbed1_0 conda-forge 3MB
+ regions 0.7 py39h44dd56e_3 conda-forge 296kB
+ healpy 1.16.1 py39hbafa5a2_2 conda-forge 4MB
+ qt-main 5.15.8 h7fe3ca9_15 conda-forge 61MB
+ pyqt 5.15.9 py39h52134e7_5 conda-forge 5MB
+ matplotlib 3.8.0 py39hf3d152e_2 conda-forge 8kB
+ pydantic 2.4.2 pyhd8ed1ab_0 conda-forge 275kB
+ fermitools 2.2.0 py39h93a0a19_0 fermi 94MB
+ gammapy 1.1 py39h0f8d45d_0 conda-forge 1MB
Upgrade:
───────────────────────────────────────────────────────────────────────────────────────────
- libsqlite 3.42.0 h2797004_0 conda-forge
+ libsqlite 3.43.2 h2797004_0 conda-forge 840kB
- openssl 3.1.1 hd590300_1 conda-forge
+ openssl 3.1.3 hd590300_0 conda-forge 3MB
- python 3.9.16 h2782a2a_0_cpython conda-forge
+ python 3.9.18 h0755675_0_cpython conda-forge 24MB
- pip 23.1.2 pyhd8ed1ab_0 conda-forge
+ pip 23.2.1 pyhd8ed1ab_0 conda-forge 1MB
Summary:
Install: 140 packages
Upgrade: 4 packages
Total download: 934MB
───────────────────────────────────────────────────────────────────────────────────────────
Downloading and Extracting Packages
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Installing pip dependencies: ...working... Ran pip subprocess with arguments:
['/srv/conda/envs/notebook/bin/python', '-m', 'pip', 'install', '-U', '-r', '/home/jovyan/condaenv.rqcgi6ru.requirements.txt', '--exists-action=b']
Pip subprocess output:
Collecting fermipy (from -r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1))
Downloading fermipy-1.2.0-py3-none-any.whl (45.8 MB)
���������������������������������������� 45.8/45.8 MB 3.5 MB/s eta 0:00:00
Collecting gdown (from -r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2))
Downloading gdown-4.7.1-py3-none-any.whl (15 kB)
Requirement already satisfied: numpy>=1.16 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (1.26.0)
Requirement already satisfied: pyyaml in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (6.0)
Requirement already satisfied: scipy in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (1.11.3)
Requirement already satisfied: astropy in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (5.3.4)
Requirement already satisfied: matplotlib>=3.3 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (3.8.0)
Requirement already satisfied: gammapy>=0.18 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (1.1)
Requirement already satisfied: healpy in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (1.16.1)
Collecting astropy-healpix (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1))
Obtaining dependency information for astropy-healpix from https://files.pythonhosted.org/packages/1f/5b/519412b0e0c1c61183d3dcb982206f3ffd3411bed3a6efdad395844bbb71/astropy_healpix-1.0.0-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata
Downloading astropy_healpix-1.0.0-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.1 kB)
Collecting filelock (from gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2))
Obtaining dependency information for filelock from https://files.pythonhosted.org/packages/5e/5d/97afbafd9d584ff1b45fcb354a479a3609bd97f912f8f1f6c563cb1fae21/filelock-3.12.4-py3-none-any.whl.metadata
Downloading filelock-3.12.4-py3-none-any.whl.metadata (2.8 kB)
Requirement already satisfied: requests[socks] in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (2.31.0)
Requirement already satisfied: six in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (1.16.0)
Collecting tqdm (from gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2))
Obtaining dependency information for tqdm from https://files.pythonhosted.org/packages/00/e5/f12a80907d0884e6dff9c16d0c0114d81b8cd07dc3ae54c5e962cc83037e/tqdm-4.66.1-py3-none-any.whl.metadata
Downloading tqdm-4.66.1-py3-none-any.whl.metadata (57 kB)
��������������������������������������� 57.6/57.6 kB 179.7 kB/s eta 0:00:00
Requirement already satisfied: beautifulsoup4 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (4.12.2)
Requirement already satisfied: regions>=0.5.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (0.7)
Requirement already satisfied: click>=7.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (8.1.7)
Requirement already satisfied: pydantic>=1.4 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (2.4.2)
Requirement already satisfied: iminuit>=2.8.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (2.24.0)
Requirement already satisfied: pyerfa>=2.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from astropy->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (2.0.0.3)
Requirement already satisfied: packaging>=19.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from astropy->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (23.1)
Requirement already satisfied: contourpy>=1.0.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (1.1.1)
Requirement already satisfied: cycler>=0.10 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (0.12.1)
Requirement already satisfied: fonttools>=4.22.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (4.43.1)
Requirement already satisfied: kiwisolver>=1.0.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (1.4.5)
Requirement already satisfied: pillow>=6.2.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (10.0.1)
Requirement already satisfied: pyparsing>=2.3.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (3.1.1)
Requirement already satisfied: python-dateutil>=2.7 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (2.8.2)
Requirement already satisfied: importlib-resources>=3.2.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (5.12.0)
Requirement already satisfied: soupsieve>1.2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from beautifulsoup4->gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (2.3.2.post1)
Requirement already satisfied: charset-normalizer<4,>=2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests[socks]->gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (3.1.0)
Requirement already satisfied: idna<4,>=2.5 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests[socks]->gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (3.4)
Requirement already satisfied: urllib3<3,>=1.21.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests[socks]->gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (2.0.3)
Requirement already satisfied: certifi>=2017.4.17 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests[socks]->gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (2023.5.7)
Requirement already satisfied: PySocks!=1.5.7,>=1.5.6 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests[socks]->gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (1.7.1)
Requirement already satisfied: zipp>=3.1.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from importlib-resources>=3.2.0->matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (3.15.0)
Requirement already satisfied: annotated-types>=0.4.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pydantic>=1.4->gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (0.6.0)
Requirement already satisfied: pydantic-core==2.10.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pydantic>=1.4->gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (2.10.1)
Requirement already satisfied: typing-extensions>=4.6.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pydantic>=1.4->gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (4.6.3)
Downloading astropy_healpix-1.0.0-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (195 kB)
��������������������������������������� 195.8/195.8 kB 166.2 kB/s eta 0:00:00
Downloading filelock-3.12.4-py3-none-any.whl (11 kB)
Downloading tqdm-4.66.1-py3-none-any.whl (78 kB)
���������������������������������������� 78.3/78.3 kB 935.6 kB/s eta 0:00:00
Installing collected packages: tqdm, filelock, gdown, astropy-healpix, fermipy
Successfully installed astropy-healpix-1.0.0 fermipy-1.2.0 filelock-3.12.4 gdown-4.7.1 tqdm-4.66.1
done
#
# To activate this environment, use
#
# $ conda activate /srv/conda/envs/notebook
#
# To deactivate an active environment, use
#
# $ conda deactivate
�[91mtime: 821.482
�[0mWill remove 1 package cache(s).
�[91mtime: 7.210
�[0m# packages in environment at /srv/conda/envs/notebook:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
aiofiles 22.1.0 pyhd8ed1ab_0 conda-forge
aiosqlite 0.19.0 pyhd8ed1ab_0 conda-forge
alembic 1.11.1 pyhd8ed1ab_0 conda-forge
alsa-lib 1.2.9 hd590300_0 conda-forge
annotated-types 0.6.0 pyhd8ed1ab_0 conda-forge
anyio 3.7.0 pyhd8ed1ab_1 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py39hb9d737c_3 conda-forge
astropy 5.3.4 py39h44dd56e_2 conda-forge
astropy-healpix 1.0.0 pypi_0 pypi
asttokens 2.2.1 pyhd8ed1ab_0 conda-forge
async_generator 1.10 py_0 conda-forge
attr 2.5.1 h166bdaf_1 conda-forge
attrs 23.1.0 pyh71513ae_1 conda-forge
babel 2.12.1 pyhd8ed1ab_1 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.12.2 pyha770c72_0 conda-forge
bleach 6.0.0 pyhd8ed1ab_0 conda-forge
blinker 1.6.2 pyhd8ed1ab_0 conda-forge
brotli 1.0.9 h166bdaf_8 conda-forge
brotli-bin 1.0.9 h166bdaf_8 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.20.1 hd590300_0 conda-forge
ca-certificates 2023.5.7 hbcca054_0 conda-forge
cairo 1.16.0 hbbf8b49_1016 conda-forge
certifi 2023.5.7 pyhd8ed1ab_0 conda-forge
certipy 0.1.3 py_0 conda-forge
cffi 1.15.1 py39he91dace_3 conda-forge
cfitsio 4.1.0 hd9d235c_0 conda-forge
charset-normalizer 3.1.0 pyhd8ed1ab_0 conda-forge
clhep 2.4.5.3 h27087fc_0 conda-forge
click 8.1.7 unix_pyh707e725_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
comm 0.1.3 pyhd8ed1ab_0 conda-forge
contourpy 1.1.1 py39h7633fee_1 conda-forge
cppunit 1.15.1 h9c3ff4c_0 conda-forge
cryptography 41.0.1 py39hd4f0224_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_0 conda-forge
dbus 1.13.6 h5008d03_3 conda-forge
debugpy 1.6.7 py39h227be39_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
exceptiongroup 1.1.1 pyhd8ed1ab_0 conda-forge
executing 1.2.0 pyhd8ed1ab_0 conda-forge
expat 2.5.0 hcb278e6_1 conda-forge
f2c 20210323183018 h166bdaf_1010 conda-forge
fermipy 1.2.0 pypi_0 pypi
fermitools 2.2.0 py39h93a0a19_0 fermi
fermitools-data 0.18 0 fermi
fftw 3.3.10 nompi_hc118613_108 conda-forge
filelock 3.12.4 pypi_0 pypi
flit-core 3.9.0 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.2 h14ed4e7_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.43.1 py39hd1e30aa_0 conda-forge
freetype 2.12.1 h267a509_2 conda-forge
gammapy 1.1 py39h0f8d45d_0 conda-forge
gdown 4.7.1 pypi_0 pypi
gettext 0.21.1 h27087fc_0 conda-forge
glib 2.78.0 hfc55251_0 conda-forge
glib-tools 2.78.0 hfc55251_0 conda-forge
graphite2 1.3.13 h58526e2_1001 conda-forge
greenlet 2.0.2 py39h3d6467e_1 conda-forge
gsl 2.7 he838d99_0 conda-forge
gst-plugins-base 1.22.5 hf7dbed1_0 conda-forge
gstreamer 1.22.5 h98fc4e7_0 conda-forge
harfbuzz 7.3.0 hdb3a94d_0 conda-forge
healpix_cxx 3.31 h268b298_1007 conda-forge
healpy 1.16.1 py39hbafa5a2_2 conda-forge
icu 72.1 hcb278e6_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
iminuit 2.24.0 py39h3d6467e_0 conda-forge
importlib-metadata 6.6.0 pyha770c72_0 conda-forge
importlib-resources 5.12.0 pyhd8ed1ab_0 conda-forge
importlib_metadata 6.6.0 hd8ed1ab_0 conda-forge
importlib_resources 5.12.0 pyhd8ed1ab_0 conda-forge
iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge
ipykernel 6.23.1 pyh210e3f2_0 conda-forge
ipython 8.14.0 pyh41d4057_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 8.0.6 pyhd8ed1ab_0 conda-forge
jedi 0.18.2 pyhd8ed1ab_0 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
json5 0.9.5 pyh9f0ad1d_0 conda-forge
jsonschema 4.17.3 pyhd8ed1ab_0 conda-forge
jupyter-offlinenotebook 0.2.2 pyh1d7be83_0 conda-forge
jupyter-resource-usage 0.7.1 pyhd8ed1ab_0 conda-forge
jupyter_client 8.2.0 pyhd8ed1ab_0 conda-forge
jupyter_core 5.3.0 py39hf3d152e_0 conda-forge
jupyter_events 0.6.3 pyhd8ed1ab_0 conda-forge
jupyter_server 1.23.6 pyhd8ed1ab_0 conda-forge
jupyter_server_fileid 0.9.0 pyhd8ed1ab_0 conda-forge
jupyter_server_ydoc 0.8.0 pyhd8ed1ab_0 conda-forge
jupyter_telemetry 0.1.0 pyhd8ed1ab_1 conda-forge
jupyter_ydoc 0.2.4 pyhd8ed1ab_0 conda-forge
jupyterhub-base 3.1.1 pyh2a2186d_0 conda-forge
jupyterhub-singleuser 3.1.1 pyh2a2186d_0 conda-forge
jupyterlab 3.6.4 pyhd8ed1ab_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_server 2.22.1 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 3.0.7 pyhd8ed1ab_1 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.5 py39h7633fee_1 conda-forge
krb5 1.21.2 h659d440_0 conda-forge
lame 3.100 h166bdaf_1003 conda-forge
lcms2 2.15 h7f713cb_2 conda-forge
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libblas 3.9.0 18_linux64_openblas conda-forge
libbrotlicommon 1.0.9 h166bdaf_8 conda-forge
libbrotlidec 1.0.9 h166bdaf_8 conda-forge
libbrotlienc 1.0.9 h166bdaf_8 conda-forge
libcap 2.69 h0f662aa_0 conda-forge
libcblas 3.9.0 18_linux64_openblas conda-forge
libclang 15.0.7 default_h7634d5b_3 conda-forge
libclang13 15.0.7 default_h9986a30_3 conda-forge
libcups 2.3.3 h4637d8d_4 conda-forge
libcurl 8.4.0 hca28451_0 conda-forge
libdeflate 1.19 hd590300_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libevent 2.1.12 hf998b51_1 conda-forge
libexpat 2.5.0 hcb278e6_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libflac 1.4.3 h59595ed_0 conda-forge
libgcc-ng 13.1.0 he5830b7_0 conda-forge
libgcrypt 1.10.1 h166bdaf_0 conda-forge
libgfortran-ng 13.2.0 h69a702a_0 conda-forge
libgfortran5 13.2.0 ha4646dd_0 conda-forge
libglib 2.78.0 hebfc3b9_0 conda-forge
libgomp 13.1.0 he5830b7_0 conda-forge
libgpg-error 1.47 h71f35ed_0 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
libjpeg-turbo 2.1.5.1 hd590300_1 conda-forge
liblapack 3.9.0 18_linux64_openblas conda-forge
libllvm15 15.0.7 h5cf9203_3 conda-forge
libnghttp2 1.52.0 h61bc06f_0 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libogg 1.3.4 h7f98852_1 conda-forge
libopenblas 0.3.24 pthreads_h413a1c8_0 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpng 1.6.39 h753d276_0 conda-forge
libpq 15.4 hfc447b1_2 conda-forge
libsndfile 1.2.2 hc60ed4a_1 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsqlite 3.43.2 h2797004_0 conda-forge
libssh2 1.11.0 h0841786_0 conda-forge
libstdcxx-ng 13.1.0 hfd8a6a1_0 conda-forge
libsystemd0 254 h3516f8a_0 conda-forge
libtiff 4.6.0 h29866fb_1 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libuv 1.44.2 h166bdaf_0 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libwebp-base 1.3.2 hd590300_0 conda-forge
libxcb 1.15 h0b41bf4_0 conda-forge
libxkbcommon 1.6.0 h5d7e998_0 conda-forge
libxml2 2.11.5 h0d562d8_0 conda-forge
libzlib 1.2.13 h166bdaf_4 conda-forge
lz4-c 1.9.4 hcb278e6_0 conda-forge
mako 1.2.4 pyhd8ed1ab_0 conda-forge
markupsafe 2.1.3 py39hd1e30aa_0 conda-forge
matplotlib 3.8.0 py39hf3d152e_2 conda-forge
matplotlib-base 3.8.0 py39he9076e7_1 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
mistune 2.0.5 pyhd8ed1ab_0 conda-forge
mpg123 1.32.3 h59595ed_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mysql-common 8.0.33 hf1915f5_5 conda-forge
mysql-libs 8.0.33 hca2cd23_5 conda-forge
nbclassic 1.0.0 pyhb4ecaf3_1 conda-forge
nbclient 0.8.0 pyhd8ed1ab_0 conda-forge
nbconvert 7.4.0 pyhd8ed1ab_0 conda-forge
nbconvert-core 7.4.0 pyhd8ed1ab_0 conda-forge
nbconvert-pandoc 7.4.0 pyhd8ed1ab_0 conda-forge
nbformat 5.9.0 pyhd8ed1ab_0 conda-forge
ncurses 6.4 hcb278e6_0 conda-forge
nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge
nodejs 18.15.0 h4abf6b9_1 conda-forge
notebook 6.5.4 pyha770c72_0 conda-forge
notebook-shim 0.2.3 pyhd8ed1ab_0 conda-forge
nspr 4.35 h27087fc_0 conda-forge
nss 3.94 h1d7d5a4_0 conda-forge
numpy 1.26.0 py39h474f0d3_0 conda-forge
oauthlib 3.2.2 pyhd8ed1ab_0 conda-forge
openjpeg 2.5.0 h488ebb8_3 conda-forge
openssl 3.1.3 hd590300_0 conda-forge
packaging 23.1 pyhd8ed1ab_0 conda-forge
pamela 1.0.0 py_0 conda-forge
pandoc 2.19.2 h32600fe_2 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
pcre2 10.40 hc3806b6_0 conda-forge
pexpect 4.8.0 pyh1a96a4e_2 conda-forge
pgplot 5.2.2 hf4b3394_1008 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 10.0.1 py39h444a776_1 conda-forge
pip 23.2.1 pyhd8ed1ab_0 conda-forge
pixman 0.42.2 h59595ed_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge
platformdirs 3.5.1 pyhd8ed1ab_0 conda-forge
pluggy 1.3.0 pyhd8ed1ab_0 conda-forge
ply 3.11 py_1 conda-forge
pmw 2.0.1 py39hf3d152e_1008 conda-forge
prometheus_client 0.17.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.38 pyha770c72_0 conda-forge
prompt_toolkit 3.0.38 hd8ed1ab_0 conda-forge
psutil 5.9.5 py39h72bdee0_0 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pulseaudio-client 16.1 hb77b528_5 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydantic 2.4.2 pyhd8ed1ab_0 conda-forge
pydantic-core 2.10.1 py39h9fdd4d6_0 conda-forge
pyerfa 2.0.0.3 py39h44dd56e_1 conda-forge
pygments 2.15.1 pyhd8ed1ab_0 conda-forge
pyjwt 2.7.0 pyhd8ed1ab_0 conda-forge
pyopenssl 23.2.0 pyhd8ed1ab_1 conda-forge
pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge
pyqt 5.15.9 py39h52134e7_5 conda-forge
pyqt5-sip 12.12.2 py39h3d6467e_5 conda-forge
pyrsistent 0.19.3 py39h72bdee0_0 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytest 7.4.2 pyhd8ed1ab_0 conda-forge
pytest-runner 6.0.0 pyhd8ed1ab_0 conda-forge
python 3.9.18 h0755675_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.17.1 pyhd8ed1ab_0 conda-forge
python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge
python_abi 3.9 3_cp39 conda-forge
pytz 2023.3 pyhd8ed1ab_0 conda-forge
pyyaml 6.0 py39hb9d737c_5 conda-forge
pyzmq 25.1.0 py39hb257651_0 conda-forge
qt-main 5.15.8 h7fe3ca9_15 conda-forge
readline 8.2 h8228510_1 conda-forge
regions 0.7 py39h44dd56e_3 conda-forge
requests 2.31.0 pyhd8ed1ab_0 conda-forge
rfc3339-validator 0.1.4 pyhd8ed1ab_0 conda-forge
rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge
ruamel.yaml 0.17.31 py39hd1e30aa_0 conda-forge
ruamel.yaml.clib 0.2.7 py39h72bdee0_1 conda-forge
scipy 1.11.3 py39h474f0d3_1 conda-forge
send2trash 1.8.2 pyh41d4057_0 conda-forge
setuptools 67.7.2 pyhd8ed1ab_0 conda-forge
sip 6.7.11 py39h3d6467e_1 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sniffio 1.3.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
sqlalchemy 2.0.15 py39hd1e30aa_0 conda-forge
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
terminado 0.17.1 pyh41d4057_0 conda-forge
tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tornado 6.3.2 py39hd1e30aa_0 conda-forge
tqdm 4.66.1 pypi_0 pypi
traitlets 5.9.0 pyhd8ed1ab_0 conda-forge
typing-extensions 4.6.3 hd8ed1ab_0 conda-forge
typing_extensions 4.6.3 pyha770c72_0 conda-forge
tzdata 2023c h71feb2d_0 conda-forge
unicodedata2 15.1.0 py39hd1e30aa_0 conda-forge
urllib3 2.0.3 pyhd8ed1ab_0 conda-forge
wcslib 7.12 h6195f97_0 conda-forge
wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 py_1 conda-forge
websocket-client 1.5.2 pyhd8ed1ab_0 conda-forge
wheel 0.40.0 pyhd8ed1ab_0 conda-forge
widgetsnbextension 4.0.7 pyhd8ed1ab_0 conda-forge
xcb-util 0.4.0 hd590300_1 conda-forge
xcb-util-image 0.4.0 h8ee46fc_1 conda-forge
xcb-util-keysyms 0.4.0 h8ee46fc_1 conda-forge
xcb-util-renderutil 0.3.9 hd590300_1 conda-forge
xcb-util-wm 0.4.1 h8ee46fc_1 conda-forge
xerces-c 3.2.4 h8d71039_2 conda-forge
xkeyboard-config 2.40 hd590300_0 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.1.1 hd590300_0 conda-forge
xorg-libsm 1.2.4 h7391055_0 conda-forge
xorg-libx11 1.8.7 h8ee46fc_0 conda-forge
xorg-libxau 1.0.11 hd590300_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h0b41bf4_2 conda-forge
xorg-libxrender 0.9.11 hd590300_0 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge
xorg-xf86vidmodeproto 2.3.1 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
y-py 0.5.9 py39h50f1755_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
ypy-websocket 0.8.2 pyhd8ed1ab_0 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zipp 3.15.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h166bdaf_4 conda-forge
zstd 1.5.5 hfc55251_0 conda-forge
Removing intermediate container 048b18990976
---> 1f021bc10eed
Step 40/50 : USER root
---> Running in 7d0dddb5a074
Removing intermediate container 7d0dddb5a074
---> ae70d7556e3d
Step 41/50 : COPY --chown=1000:1000 src/ ${REPO_DIR}/
---> 6c8ae52baeb3
Step 42/50 : LABEL repo2docker.ref="5dafaa797b46cef9f5e1a9c9917ffa4b805aaf45"
---> Running in ae0f6138dd06
Removing intermediate container ae0f6138dd06
---> f66410c73024
Step 43/50 : LABEL repo2docker.repo="https://github.com/arnimtest/PHYS2015_2023"
---> Running in 3eb286ad07b9
Removing intermediate container 3eb286ad07b9
---> 3712c755f848
Step 44/50 : LABEL repo2docker.version="2023.06.0+8.gd414e99"
---> Running in 25a98b53b65b
Removing intermediate container 25a98b53b65b
---> 49e99eb2fba0
Step 45/50 : USER ${NB_USER}
---> Running in b66c715b318e
Removing intermediate container b66c715b318e
---> 1dc2df110de2
Step 46/50 : ENV PYTHONUNBUFFERED=1
---> Running in 928a6b5f81d6
Removing intermediate container 928a6b5f81d6
---> 64c32148da05
Step 47/50 : COPY /python3-login /usr/local/bin/python3-login
---> ef4c775c227d
Step 48/50 : COPY /repo2docker-entrypoint /usr/local/bin/repo2docker-entrypoint
---> ae624ccc3b49
Step 49/50 : ENTRYPOINT ["/usr/local/bin/repo2docker-entrypoint"]
---> Running in c9d04f3b3eaa
Removing intermediate container c9d04f3b3eaa
---> c2a9fc52f0f7
Step 50/50 : CMD ["jupyter", "notebook", "--ip", "0.0.0.0"]
---> Running in 63ba1b66a4b9
Removing intermediate container 63ba1b66a4b9
---> 6f9b75493599
{"aux": {"ID": "sha256:6f9b75493599df61e4a620dd6453876345cf9d9f453838c2cf82b621fb2e7f37"}}Successfully built 6f9b75493599
Successfully tagged gesiscss/binder-r2d-g5b5b759-arnimtest-2dphys2015-5f2023-fd7fc4:5dafaa797b46cef9f5e1a9c9917ffa4b805aaf45
Error during build: UnixHTTPConnectionPool(host='localhost', port=None): Read timed out.
time curl https://notebooks.gesis.org/binder/health
{"ok": true, "checks": [{"service": "Docker registry", "ok": true}, {"service": "JupyterHub API", "ok": true}, {"service": "Pod quota", "total_pods": 62, "build_pods": 8, "user_pods": 54, "quota": 120, "ok": true, "_ignore_failure": true}]}
curl https://notebooks.gesis.org/binder/health 0.04s user 0.02s system 0% cpu 1:03.32 total
Response time > 1 min 🤔
[BinderHub][https://github.com/jupyterhub/binderhub) failed to build https://github.com/binder-examples/requirements.
Found built image, launching...
Launching server...
Server requested
2023-05-05T11:31:50.243399Z [Normal] Successfully assigned gesis/jupyter-binder-2dexamples-2drequirements-2d5soi2l28 to spko-css-app03
2023-05-05T11:31:50Z [Normal] Pulling image "jupyterhub/mybinder.org-tc-init:set-by-chartpress"
2023-05-05T11:31:51Z [Warning] Failed to pull image "jupyterhub/mybinder.org-tc-init:set-by-chartpress": rpc error: code = NotFound desc = failed to pull and unpack image "docker.io/jupyterhub/mybinder.org-tc-init:set-by-chartpress": failed to resolve reference "docker.io/jupyterhub/mybinder.org-tc-init:set-by-chartpress": docker.io/jupyterhub/mybinder.org-tc-init:set-by-chartpress: not found
2023-05-05T11:31:51Z [Warning] Error: ErrImagePull
2023-05-05T11:31:52Z [Normal] Back-off pulling image "jupyterhub/mybinder.org-tc-init:set-by-chartpress"
2023-05-05T11:31:52Z [Warning] Error: ImagePullBackOff
Spawn failed: Timeout
BinderHub launches container successfuly.
URL
with https://github.com/binder-examples/requirementslaunch
URL
with launch
resulted in no issue.
repo2docker failed to build https://github.com/sgibson91/mybinder.org-user-survey-nlp/.
Log displayed to user
Step 51/52 : ENTRYPOINT ["/usr/local/bin/repo2docker-entrypoint"]
---> Running in 4a8e9b6b773e
Removing intermediate container 4a8e9b6b773e
---> f40a9f03be04
Step 52/52 : CMD ["jupyter", "notebook", "--ip", "0.0.0.0"]
---> Running in 902a10895a6b
Removing intermediate container 902a10895a6b
---> 0d984310ca34
{"aux": {"ID": "sha256:0d984310ca34dd377f145d640e58afc062671bf3d66fbf8fb4fb306e1aa0db10"}}Successfully built 0d984310ca34
Successfully tagged gesiscss/binder-r2d-g5b5b759-sgibson91-2dmybinder-2eorg-2duser-2dsurvey-2dnlp-cbf4b8:1ac84874f0885fdc812cca2cbd6dc4e4aefdbc75
Pushing image
Error during build: UnixHTTPConnectionPool(host='localhost', port=None): Read timed out.
Log at Kubernetes pod
[I 230620 21:30:01 build:479] Started build build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:30:01 build:481] Watching build pod build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:30:03 build:563] Watching logs of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:32:45 build:595] Finished streaming logs of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[W 230620 21:32:46 builder:161] Stream closed while handling /binder/build/gh/sgibson91/mybinder.org-user-survey-nlp/main?build_token=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJleHAiOjE2ODcyOTY4OTksImF1ZCI6ImdoL3NnaWJzb245MS9teWJpb
mRlci5vcmctdXNlci1zdXJ2ZXktbmxwL21haW4iLCJvcmlnaW4iOiJteWJpbmRlci5vcmcifQ.J0hcMZnVv1O3qJnEUD5JLV6oui2eUpjM8lhOQfId8IY
[I 230620 21:32:46 log:135] 200 GET /binder/build/gh/sgibson91/mybinder.org-user-survey-nlp/main?build_token=[secret] ([email protected]) 166362.69ms
[I 230620 21:46:49 repoproviders:916] Using cached ref for https://api.github.com/repos/sgibson91/mybinder.org-user-survey-nlp/commits/main: 1ac84874f0885fdc812cca2cbd6dc4e4aefdbc75
[I 230620 21:46:51 build:474] Build build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32 already running
[I 230620 21:46:51 build:481] Watching build pod build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:46:51 build:563] Watching logs of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[W 230620 21:46:57 builder:161] Stream closed while handling /binder/build/gh/sgibson91/mybinder.org-user-survey-nlp/main?build_token=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJleHAiOjE2ODcyOTc5MDksImF1ZCI6ImdoL3NnaWJzb245MS9teWJpb
mRlci5vcmctdXNlci1zdXJ2ZXktbmxwL21haW4iLCJvcmlnaW4iOiJteWJpbmRlci5vcmcifQ.tGCPwTfeuIkD_-toqQiChHrz2LwQ1RPH6SGP4S48XkA
[I 230620 21:46:57 log:135] 200 GET /binder/build/gh/sgibson91/mybinder.org-user-survey-nlp/main?build_token=[secret] ([email protected]) 8189.26ms
[I 230620 21:47:02 build:573] Stopping logs of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:47:21 build:556] Stopping watch of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:51:07 repoproviders:916] Using cached ref for https://api.github.com/repos/sgibson91/mybinder.org-user-survey-nlp/commits/main: 1ac84874f0885fdc812cca2cbd6dc4e4aefdbc75
[I 230620 21:51:09 build:474] Build build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32 already running
[I 230620 21:51:09 build:481] Watching build pod build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:51:09 build:563] Watching logs of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 22:01:55 build:595] Finished streaming logs of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 22:01:56 builder:617] Launching server for https://github.com/sgibson91/mybinder.org-user-survey-nlp: 0 other servers running this repo (191 total)
[I 230620 22:01:56 launcher:197] Creating user sgibson91-mybin-user-survey-nlp-rhaku0a5 for image gesiscss/binder-r2d-g5b5b759-sgibson91-2dmybinder-2eorg-2duser-2dsurvey-2dnlp-cbf4b8:1ac84874f0885fdc812cca2cbd6dc4e4aefdbc75
[I 230620 22:01:56 launcher:257] Starting server for user sgibson91-mybin-user-survey-nlp-rhaku0a5 with image gesiscss/binder-r2d-g5b5b759-sgibson91-2dmybinder-2eorg-2duser-2dsurvey-2dnlp-cbf4b8:1ac84874f0885fdc812cca2cbd6dc4e4a
efdbc75
[I 230620 22:05:13 builder:722] Launched https://github.com/sgibson91/mybinder.org-user-survey-nlp in 196s
[I 230620 22:06:13 log:135] 200 GET /binder/build/gh/sgibson91/mybinder.org-user-survey-nlp/main?build_token=[secret] ([email protected]) 905439.79ms
repo2docker builds container successfuly.
URL
with https://github.com/sgibson91/mybinder.org-user-survey-nlp/launch
URL
with https://github.com/sgibson91/mybinder.org-user-survey-nlp/launch
resulted in no issue.
I have a repository where the last build was Jan 17th
https://github.com/gesiscss/btw17_sample_scripts/
The repository has been tested & running then. There haven't been any further commits since then. However, when I try to launch the repository now rebuilds 👇
Have we purged any images recently from https://hub.docker.com/u/gesiscss/ ?
During stress test!
Waiting for build to start...
---> Using cache
---> 0789f5d70008
Step 15/53 : ENV NB_PYTHON_PREFIX=${CONDA_DIR}/envs/notebook
---> Using cache
---> 89e05983b3d4
Step 16/53 : ENV NPM_DIR=${APP_BASE}/npm
---> Using cache
---> d9ab9faeede3
Step 17/53 : ENV NPM_CONFIG_GLOBALCONFIG=${NPM_DIR}/npmrc
---> Using cache
---> 5333033100a9
Step 18/53 : ENV NB_ENVIRONMENT_FILE=/tmp/env/environment.lock
---> Using cache
---> 87b6194588b4
Step 19/53 : ENV MAMBA_ROOT_PREFIX=${CONDA_DIR}
---> Using cache
---> ccc3cc01fd42
Step 20/53 : ENV MAMBA_EXE=${CONDA_DIR}/bin/mamba
---> Using cache
---> a99a3e8425e5
Step 21/53 : ENV CONDA_PLATFORM=linux-64
---> Using cache
---> 3801a3a9ba44
Step 22/53 : ENV KERNEL_PYTHON_PREFIX=${CONDA_DIR}/envs/kernel
---> Using cache
---> 5fb413100ecb
Step 23/53 : ENV KERNEL_ENVIRONMENT_FILE=/tmp/env/kernel-environment.lock
---> Using cache
---> e7cfc913322b
Step 24/53 : ENV PATH=${NB_PYTHON_PREFIX}/bin:${KERNEL_PYTHON_PREFIX}/bin:${CONDA_DIR}/bin:${NPM_DIR}/bin:${PATH}
---> Using cache
---> a412b04461ca
Step 25/53 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2factivate-2dconda-2esh-44e764 /etc/profile.d/activate-conda.sh
---> Using cache
---> 7d846b2f469a
Step 26/53 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2fenvironment-2epy-2d3-2e10-2dlinux-2d64-2elock-388e0b /tmp/env/environment.lock
---> Using cache
---> 30477d7f36a0
Step 27/53 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2fenvironment-2epy-2d3-2e6-2dlinux-2d64-2elock-9604d2 /tmp/env/kernel-environment.lock
---> Using cache
---> d287d0d5e9c0
Step 28/53 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2finstall-2dbase-2denv-2ebash-e5509f /tmp/install-base-env.bash
---> Using cache
---> e04c3ac805c7
Step 29/53 : RUN TIMEFORMAT='time: %3R' bash -c 'time /tmp/install-base-env.bash' && rm -rf /tmp/install-base-env.bash /tmp/env
---> Using cache
---> 96be281c6fe6
Step 30/53 : RUN mkdir -p ${NPM_DIR} && chown -R ${NB_USER}:${NB_USER} ${NPM_DIR}
---> Using cache
---> eafaed1e0254
Step 31/53 : USER root
---> Using cache
---> a3a9d9f0d5fb
Step 32/53 : ARG REPO_DIR=${HOME}
---> Using cache
---> d309f78db8de
Step 33/53 : ENV REPO_DIR=${REPO_DIR}
---> Using cache
---> da0e616ac32e
Step 34/53 : RUN if [ ! -d "${REPO_DIR}" ]; then /usr/bin/install -o ${NB_USER} -g ${NB_USER} -d "${REPO_DIR}"; fi
---> Using cache
---> 8bcd7eb78689
Step 35/53 : WORKDIR ${REPO_DIR}
---> Using cache
---> 227ba50a92d0
Step 36/53 : RUN chown ${NB_USER}:${NB_USER} ${REPO_DIR}
---> Using cache
---> 592162b68e48
Step 37/53 : ENV PATH=${HOME}/.local/bin:${REPO_DIR}/.local/bin:${PATH}
---> Using cache
---> 9fa90f2a57a0
Step 38/53 : ENV CONDA_DEFAULT_ENV=${KERNEL_PYTHON_PREFIX}
---> Using cache
---> 302fde57f83d
Step 39/53 : COPY --chown=1000:1000 src/binder/environment.yml ${REPO_DIR}/binder/environment.yml
---> 47404095ed70
Step 40/53 : RUN apt-get -qq update && apt-get install --yes --no-install-recommends texlive && apt-get -qq purge && apt-get -qq clean && rm -rf /var/lib/apt/lists/*
---> Running in c56c53ca6db9
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
fonts-lmodern libavahi-client3 libavahi-common-data libavahi-common3
libcups2 libcupsimage2 libdbus-1-3 libgs9 libgs9-common libidn11 libijs-0.35
libjbig2dec0 libkpathsea6 libnspr4 libnss3 libpaper-utils libpaper1
libpoppler73 libpotrace0 libptexenc1 libsynctex1 libtexlua52 libtexluajit2
libxaw7 libxi6 libxmu6 libxpm4 libzzip-0-13 poppler-data t1utils tex-common
texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base
texlive-latex-recommended xdg-utils
Suggested packages:
cups-common poppler-utils ghostscript fonts-japanese-mincho
| fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic
fonts-arphic-ukai fonts-arphic-uming fonts-nanum debhelper gv
| postscript-viewer perl-tk xpdf-reader | pdf-viewer
texlive-fonts-recommended-doc texlive-latex-base-doc
texlive-latex-recommended-doc texlive-pstricks
Recommended packages:
libcupsfilters1 dbus fonts-droid-fallback lmodern tex-gyre tipa
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
fonts-lmodern libavahi-client3 libavahi-common-data libavahi-common3
libcups2 libcupsimage2 libdbus-1-3 libgs9 libgs9-common libidn11 libijs-0.35
libjbig2dec0 libkpathsea6 libnspr4 libnss3 libpaper-utils libpaper1
libpoppler73 libpotrace0 libptexenc1 libsynctex1 libtexlua52 libtexluajit2
libxaw7 libxi6 libxmu6 libxpm4 libzzip-0-13 poppler-data t1utils tex-common
texlive texlive-base texlive-binaries texlive-fonts-recommended
texlive-latex-base texlive-latex-recommended xdg-utils
0 upgraded, 38 newly installed, 0 to remove and 1 not upgraded.
Need to get 65.0 MB of archives.
After this operation, 209 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu bionic/main amd64 poppler-data all 0.4.8-2 [1,479 kB]
Get:2 http://archive.ubuntu.com/ubuntu bionic/main amd64 tex-common all 6.09 [33.0 kB]
Get:3 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libdbus-1-3 amd64 1.12.2-1ubuntu1.4 [175 kB]
Get:4 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libidn11 amd64 1.33-2.1ubuntu1.2 [46.6 kB]
Get:5 http://archive.ubuntu.com/ubuntu bionic/main amd64 fonts-lmodern all 2.004.5-3 [4,551 kB]
Get:6 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libavahi-common-data amd64 0.7-3.1ubuntu1.3 [22.2 kB]
Get:7 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libavahi-common3 amd64 0.7-3.1ubuntu1.3 [21.6 kB]
Get:8 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libavahi-client3 amd64 0.7-3.1ubuntu1.3 [25.2 kB]
Get:9 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libcups2 amd64 2.2.7-1ubuntu2.10 [211 kB]
Get:10 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libcupsimage2 amd64 2.2.7-1ubuntu2.10 [18.6 kB]
Get:11 http://archive.ubuntu.com/ubuntu bionic/main amd64 libijs-0.35 amd64 0.35-13 [15.5 kB]
Get:12 http://archive.ubuntu.com/ubuntu bionic/main amd64 libjbig2dec0 amd64 0.13-6 [55.9 kB]
Get:13 http://archive.ubuntu.com/ubuntu bionic/main amd64 libpaper1 amd64 1.1.24+nmu5ubuntu1 [13.6 kB]
Get:14 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libgs9-common all 9.26~dfsg+0-0ubuntu0.18.04.18 [5,092 kB]
Get:15 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libgs9 amd64 9.26~dfsg+0-0ubuntu0.18.04.18 [2,264 kB]
Get:16 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libkpathsea6 amd64 2017.20170613.44572-8ubuntu0.2 [55.0 kB]
Get:17 http://archive.ubuntu.com/ubuntu bionic/main amd64 libnspr4 amd64 2:4.18-1ubuntu1 [112 kB]
Get:18 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libnss3 amd64 2:3.35-2ubuntu2.16 [1,220 kB]
Get:19 http://archive.ubuntu.com/ubuntu bionic/main amd64 libpaper-utils amd64 1.1.24+nmu5ubuntu1 [8,170 B]
Get:20 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libpoppler73 amd64 0.62.0-2ubuntu2.14 [800 kB]
Get:21 http://archive.ubuntu.com/ubuntu bionic/main amd64 libpotrace0 amd64 1.14-2 [17.4 kB]
Get:22 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libptexenc1 amd64 2017.20170613.44572-8ubuntu0.2 [34.5 kB]
Get:23 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libsynctex1 amd64 2017.20170613.44572-8ubuntu0.2 [41.4 kB]
Get:24 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libtexlua52 amd64 2017.20170613.44572-8ubuntu0.2 [91.1 kB]
Get:25 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libtexluajit2 amd64 2017.20170613.44572-8ubuntu0.2 [231 kB]
Get:26 http://archive.ubuntu.com/ubuntu bionic/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB]
Get:27 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libxpm4 amd64 1:3.5.12-1ubuntu0.18.04.2 [34.8 kB]
Get:28 http://archive.ubuntu.com/ubuntu bionic/main amd64 libxaw7 amd64 2:1.0.13-1 [173 kB]
Get:29 http://archive.ubuntu.com/ubuntu bionic/main amd64 libxi6 amd64 2:1.7.9-1 [29.2 kB]
Get:30 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libzzip-0-13 amd64 0.13.62-3.1ubuntu0.18.04.1 [26.0 kB]
Get:31 http://archive.ubuntu.com/ubuntu bionic/main amd64 t1utils amd64 1.41-2 [56.0 kB]
Get:32 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 texlive-binaries amd64 2017.20170613.44572-8ubuntu0.2 [8,165 kB]
Get:33 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 xdg-utils all 1.1.2-1ubuntu2.5 [60.4 kB]
Get:34 http://archive.ubuntu.com/ubuntu bionic/main amd64 texlive-base all 2017.20180305-1 [18.7 MB]
Get:35 http://archive.ubuntu.com/ubuntu bionic/universe amd64 texlive-fonts-recommended all 2017.20180305-1 [5,262 kB]
Get:36 http://archive.ubuntu.com/ubuntu bionic/main amd64 texlive-latex-base all 2017.20180305-1 [951 kB]
Get:37 http://archive.ubuntu.com/ubuntu bionic/main amd64 texlive-latex-recommended all 2017.20180305-1 [14.9 MB]
Get:38 http://archive.ubuntu.com/ubuntu bionic/universe amd64 texlive all 2017.20180305-1 [14.4 kB]
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Setting up libgs9-common (9.26~dfsg+0-0ubuntu0.18.04.18) ...
Setting up libxi6:amd64 (2:1.7.9-1) ...
Setting up libkpathsea6:amd64 (2017.20170613.44572-8ubuntu0.2) ...
Setting up libpaper1:amd64 (1.1.24+nmu5ubuntu1) ...
Creating config file /etc/papersize with new version
Setting up libtexlua52:amd64 (2017.20170613.44572-8ubuntu0.2) ...
Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ...
Setting up libsynctex1:amd64 (2017.20170613.44572-8ubuntu0.2) ...
Setting up libptexenc1:amd64 (2017.20170613.44572-8ubuntu0.2) ...
Setting up tex-common (6.09) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up poppler-data (0.4.8-2) ...
Setting up libnspr4:amd64 (2:4.18-1ubuntu1) ...
Setting up libxmu6:amd64 (2:1.1.2-2) ...
Setting up libjbig2dec0:amd64 (0.13-6) ...
Setting up t1utils (1.41-2) ...
Setting up libijs-0.35:amd64 (0.35-13) ...
Setting up libxpm4:amd64 (1:3.5.12-1ubuntu0.18.04.2) ...
Setting up libpotrace0 (1.14-2) ...
Setting up libzzip-0-13:amd64 (0.13.62-3.1ubuntu0.18.04.1) ...
Setting up xdg-utils (1.1.2-1ubuntu2.5) ...
Setting up libtexluajit2:amd64 (2017.20170613.44572-8ubuntu0.2) ...
Setting up libidn11:amd64 (1.33-2.1ubuntu1.2) ...
Setting up libdbus-1-3:amd64 (1.12.2-1ubuntu1.4) ...
Setting up fonts-lmodern (2.004.5-3) ...
Setting up libavahi-common-data:amd64 (0.7-3.1ubuntu1.3) ...
Setting up libxaw7:amd64 (2:1.0.13-1) ...
Setting up libnss3:amd64 (2:3.35-2ubuntu2.16) ...
Setting up libpoppler73:amd64 (0.62.0-2ubuntu2.14) ...
Setting up libavahi-common3:amd64 (0.7-3.1ubuntu1.3) ...
Setting up libavahi-client3:amd64 (0.7-3.1ubuntu1.3) ...
Setting up libcups2:amd64 (2.2.7-1ubuntu2.10) ...
Setting up libcupsimage2:amd64 (2.2.7-1ubuntu2.10) ...
Setting up libgs9:amd64 (9.26~dfsg+0-0ubuntu0.18.04.18) ...
Setting up texlive-binaries (2017.20170613.44572-8ubuntu0.2) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
update-alternatives: warning: skip creation of /usr/share/man/man1/bibtex.1.gz because associated file /usr/share/man/man1/bibtex.original.1.gz (of link group bibtex) doesn't exist
Setting up texlive-base (2017.20180305-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
tl-paper: setting paper size for dvipdfmx to letter: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for dvips to letter: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for pdftex to letter: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
tl-paper: setting paper size for xdvi to letter: /var/lib/texmf/xdvi/XDvi-paper
Setting up texlive-fonts-recommended (2017.20180305-1) ...
Setting up texlive-latex-base (2017.20180305-1) ...
Setting up texlive-latex-recommended (2017.20180305-1) ...
Setting up texlive (2017.20180305-1) ...
Processing triggers for mime-support (3.60ubuntu1) ...
Processing triggers for libc-bin (2.27-3ubuntu1.6) ...
Processing triggers for fontconfig (2.12.6-0ubuntu2) ...
Processing triggers for tex-common (6.09) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
Removing intermediate container c56c53ca6db9
---> 0fc52858c89d
Step 41/53 : USER ${NB_USER}
---> Running in 336025f97585
Removing intermediate container 336025f97585
---> 6c9b08f7f53b
Step 42/53 : RUN TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${KERNEL_PYTHON_PREFIX} --file "binder/environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${KERNEL_PYTHON_PREFIX} '
---> Running in 6bc038202416
Looking for: ['python=3.6', 'cython', 'ipython', 'ipyparallel', 'ipywidgets', 'numpy', 'matplotlib', 'mpi4py', 'networkx', 'pandas', 'scikit-image', 'scikit-learn', 'sympy']
Transaction
Prefix: /srv/conda/envs/kernel
Updating specs:
- cython
- ipyparallel
- numpy
- matplotlib
- mpi4py
- networkx
- pandas
- scikit-image
- scikit-learn
- sympy
- python=3.6
- ipython
- ipywidgets
Package Version Build Channel Size
──────────────────────────────────────────────────────────────────────────────────────
Install:
──────────────────────────────────────────────────────────────────────────────────────
+ cython 0.29.24 py36hc4f0c31_0 conda-forge 2MB
+ libgfortran5 13.2.0 ha4646dd_0 conda-forge 1MB
+ kiwisolver 1.3.1 py36h605e78d_1 conda-forge 80kB
+ pyqt5-sip 4.19.18 py36hc4f0c31_7 conda-forge 317kB
+ gmp 6.2.1 h58526e2_0 conda-forge 826kB
+ yaml 0.2.5 h7f98852_2 conda-forge 89kB
+ libpq 14.2 hd57d9b9_0 conda-forge 3MB
+ jpeg 9e h166bdaf_1 conda-forge 274kB
+ libdeflate 1.10 h7f98852_0 conda-forge 79kB
+ mpi 1.0 openmpi conda-forge 4kB
+ libiconv 1.17 h166bdaf_0 conda-forge 1MB
+ jbig 2.1 h7f98852_2003 conda-forge 44kB
+ lerc 3.0 h9c3ff4c_0 conda-forge 222kB
+ libwebp-base 1.2.2 h7f98852_1 conda-forge 844kB
+ libllvm13 13.0.1 hf817b99_2 conda-forge 35MB
+ expat 2.4.8 h27087fc_0 conda-forge 192kB
+ lz4-c 1.9.3 h9c3ff4c_1 conda-forge 184kB
+ alsa-lib 1.2.6.1 h7f98852_0 conda-forge 592kB
+ libevent 2.1.10 h9b69904_4 conda-forge 1MB
+ mysql-common 8.0.29 haf5c9bc_0 conda-forge 2MB
+ nspr 4.32 h9c3ff4c_1 conda-forge 239kB
+ gettext 0.19.8.1 h73d1719_1008 conda-forge 4MB
+ pcre 8.45 h9c3ff4c_0 conda-forge 259kB
+ libopus 1.3.1 h7f98852_1 conda-forge 261kB
+ libpng 1.6.37 h21135ba_2 conda-forge 314kB
+ pthread-stubs 0.4 h36c2ea0_1001 conda-forge 6kB
+ xorg-libxau 1.0.9 h7f98852_0 conda-forge 13kB
+ xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge 19kB
+ libuuid 2.32.1 h7f98852_1000 conda-forge 28kB
+ cudatoolkit 11.7.0 hd8887f6_10 conda-forge 872MB
+ libogg 1.3.4 h7f98852_1 conda-forge 211kB
+ libgfortran-ng 13.2.0 h69a702a_0 conda-forge 23kB
+ mpfr 4.1.0 h9202a9a_1 conda-forge 3MB
+ pyyaml 5.4.1 py36h8f6f2f9_1 conda-forge 198kB
+ libxml2 2.9.12 h885dcf4_1 conda-forge 778kB
+ libclang 13.0.1 default_hc23dcda_0 conda-forge 12MB
+ zstd 1.5.2 h8a70e8d_1 conda-forge 462kB
+ nss 3.77 h2350873_0 conda-forge 2MB
+ libglib 2.70.2 h174f98d_4 conda-forge 3MB
+ freetype 2.10.4 h0708190_1 conda-forge 911kB
+ libxcb 1.13 h7f98852_1004 conda-forge 400kB
+ ucx 1.12.1 h7a399c7_1 conda-forge 20MB
+ libvorbis 1.3.7 h9c3ff4c_0 conda-forge 286kB
+ mpc 1.2.1 h9f54685_0 conda-forge 109kB
+ libxkbcommon 1.0.3 he3ba5ed_0 conda-forge 595kB
+ mysql-libs 8.0.29 h28c427c_0 conda-forge 2MB
+ libtiff 4.3.0 h542a066_3 conda-forge 653kB
+ gstreamer 1.20.2 hd4edc92_1 conda-forge 2MB
+ dbus 1.13.6 h5008d03_3 conda-forge 619kB
+ fontconfig 2.14.0 h8e229c2_0 conda-forge 312kB
+ openmpi 4.1.3 h846660c_103 conda-forge 4MB
+ gmpy2 2.1.0b5 py36h3f4d9dc_0 conda-forge 212kB
+ openjpeg 2.5.0 h7d73246_0 conda-forge 527kB
+ lcms2 2.12 hddcbb42_0 conda-forge 453kB
+ gst-plugins-base 1.20.2 hf6a322e_1 conda-forge 3MB
+ mpi4py 3.1.1 py36he1a1962_0 conda-forge 652kB
+ mpmath 1.3.0 pyhd8ed1ab_0 conda-forge 438kB
+ joblib 1.2.0 pyhd8ed1ab_0 conda-forge 210kB
+ threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge 18kB
+ cloudpickle 2.2.1 pyhd8ed1ab_0 conda-forge 28kB
+ cycler 0.11.0 pyhd8ed1ab_0 conda-forge 10kB
+ toolz 0.12.0 pyhd8ed1ab_0 conda-forge 49kB
+ colorama 0.4.5 pyhd8ed1ab_0 conda-forge 19kB
+ olefile 0.46 pyh9f0ad1d_1 conda-forge 33kB
+ font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge 397kB
+ font-ttf-inconsolata 3.000 h77eed37_0 conda-forge 97kB
+ font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge 701kB
+ font-ttf-ubuntu 0.83 hab24e00_0 conda-forge 2MB
+ dask-core 2021.3.0 pyhd8ed1ab_0 conda-forge 719kB
+ tqdm 4.65.0 pyhd8ed1ab_0 conda-forge 88kB
+ fonts-conda-forge 1 0 conda-forge 4kB
+ ipyparallel 8.6.1 pyhd8ed1ab_0 conda-forge 208kB
+ fonts-conda-ecosystem 1 0 conda-forge 4kB
+ libopenblas 0.3.21 h043d6bf_0 pkgs/main 6MB
+ sympy 1.8 py36h5fab9bb_0 conda-forge 12MB
+ cytoolz 0.11.0 py36h8f6f2f9_3 conda-forge 403kB
+ pillow 8.3.2 py36h676a545_0 conda-forge 719kB
+ qt 5.12.9 h1304e3e_6 conda-forge 103MB
+ libblas 3.9.0 16_linux64_openblas conda-forge 13kB
+ pyqt-impl 5.12.3 py36h7ec31b9_7 conda-forge 6MB
+ libcblas 3.9.0 16_linux64_openblas conda-forge 13kB
+ liblapack 3.9.0 16_linux64_openblas conda-forge 13kB
+ pyqtwebengine 5.12.1 py36h7ec31b9_7 conda-forge 179kB
+ pyqtchart 5.12 py36h7ec31b9_7 conda-forge 263kB
+ numpy 1.19.5 py36hfc0c790_2 conda-forge 6MB
+ pyqt 5.12.3 py36h5fab9bb_7 conda-forge 22kB
+ imagecodecs-lite 2019.12.3 py36h92226af_3 conda-forge 211kB
+ pywavelets 1.1.1 py36he33b4a0_3 conda-forge 5MB
+ scipy 1.5.3 py36h81d768a_1 conda-forge 20MB
+ matplotlib-base 3.3.4 py36hd391965_0 conda-forge 7MB
+ pandas 1.1.5 py36h284efc9_0 conda-forge 12MB
+ scikit-learn 0.24.2 py36hc89565f_1 conda-forge 8MB
+ matplotlib 3.3.4 py36h5fab9bb_0 conda-forge 6kB
+ imageio 2.31.5 pyh8c1a49c_0 conda-forge 291kB
+ tifffile 2020.6.3 py_0 conda-forge 111kB
+ networkx 2.7 pyhd8ed1ab_0 conda-forge 2MB
+ scikit-image 0.17.2 py36h284efc9_4 conda-forge 12MB
Upgrade:
──────────────────────────────────────────────────────────────────────────────────────
- nodejs 14.18.3 h96d913c_3 conda-forge
+ nodejs 17.8.0 h784f1fd_0 conda-forge 16MB
- widgetsnbextension 3.5.1 py36h5fab9bb_4 conda-forge
+ widgetsnbextension 3.6.1 pyha770c72_0 conda-forge 1MB
- ipywidgets 7.6.5 pyhd8ed1ab_0 conda-forge
+ ipywidgets 7.7.4 pyhd8ed1ab_0 conda-forge 104kB
Downgrade:
──────────────────────────────────────────────────────────────────────────────────────
- icu 70.1 h27087fc_0 conda-forge
+ icu 69.1 h9c3ff4c_0 conda-forge 14MB
Summary:
Install: 97 packages
Upgrade: 3 packages
Downgrade: 1 packages
Total download: 1GB
──────────────────────────────────────────────────────────────────────────────────────
�[91mbash: line 1: 8 Killed ${MAMBA_EXE} env update -p ${KERNEL_PYTHON_PREFIX} --file "binder/environment.yml"
time: 509.306
�[0mRemoving intermediate container 6bc038202416
The command '/bin/sh -c TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${KERNEL_PYTHON_PREFIX} --file "binder/environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${KERNEL_PYTHON_PREFIX} '' returned a non-zero code: 137
When filling in repository information on https://notebooks.gesis.org/binder/, the form automatically creates a copyable URL ("Copy the URL below and share your Binder with others"). However, that URL points to mybinder.org. Instead, as per the FAQ, it should use https://notebooks.gesis.org/binder/ as the prefix.
Users would expect this URL to also point to GESIS notebooks. So this should be updated to reflect the correct URL.
repo2docker failed to build .
Waiting for build to start...
Picked Git content provider.
Cloning into '/tmp/repo2dockernv1pyp2i'...
Updating files: 100% (130/130), done.
HEAD is now at 483f369 Update binder url
Building conda environment for python=3.9
Using CondaBuildPack builder
Step 1/50 : FROM buildpack-deps:bionic
---> aeecfa359fe2
Step 2/50 : ENV DEBIAN_FRONTEND=noninteractive
---> Using cache
---> 24d5a784a485
Step 3/50 : RUN apt-get -qq update && apt-get -qq install --yes --no-install-recommends locales > /dev/null && apt-get -qq purge && apt-get -qq clean && rm -rf /var/lib/apt/lists/*
---> Using cache
---> 9d3554e4a7c1
Step 4/50 : RUN echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && locale-gen
---> Using cache
---> 6a601a4c39ee
Step 5/50 : ENV LC_ALL=en_US.UTF-8 LANG=en_US.UTF-8 LANGUAGE=en_US.UTF-8
---> Using cache
---> fb180bd88c73
Step 6/50 : ENV SHELL=/bin/bash
---> Using cache
---> c5384dd35223
Step 7/50 : ARG NB_USER
---> Using cache
---> e9010cc0f85a
Step 8/50 : ARG NB_UID
---> Using cache
---> c0eca1c9e4f9
Step 9/50 : ENV USER=${NB_USER} HOME=/home/${NB_USER}
---> Using cache
---> 60d1896a7d04
Step 10/50 : RUN groupadd --gid ${NB_UID} ${NB_USER} && useradd --comment "Default user" --create-home --gid ${NB_UID} --no-log-init --shell /bin/bash --uid ${NB_UID} ${NB_USER}
---> Using cache
---> 9af0a83d0b90
Step 11/50 : RUN apt-get -qq update && apt-get -qq install --yes --no-install-recommends less unzip > /dev/null && apt-get -qq purge && apt-get -qq clean && rm -rf /var/lib/apt/lists/*
---> Using cache
---> b77ce1367b3b
Step 12/50 : EXPOSE 8888
---> Using cache
---> 2deb5c061745
Step 13/50 : ENV APP_BASE=/srv
---> Using cache
---> 2bba371aaabc
Step 14/50 : ENV CONDA_DIR=${APP_BASE}/conda
---> Using cache
---> 9c94c5401c96
Step 15/50 : ENV NB_PYTHON_PREFIX=${CONDA_DIR}/envs/notebook
---> Using cache
---> 9bba3b5e3aa4
Step 16/50 : ENV NPM_DIR=${APP_BASE}/npm
---> Using cache
---> 92c112e89785
Step 17/50 : ENV NPM_CONFIG_GLOBALCONFIG=${NPM_DIR}/npmrc
---> Using cache
---> 31f013e7f40d
Step 18/50 : ENV NB_ENVIRONMENT_FILE=/tmp/env/environment.lock
---> Using cache
---> 39c6de5efd0d
Step 19/50 : ENV MAMBA_ROOT_PREFIX=${CONDA_DIR}
---> Using cache
---> 7c16b2fd9374
Step 20/50 : ENV MAMBA_EXE=${CONDA_DIR}/bin/mamba
---> Using cache
---> c01242c2e57d
Step 21/50 : ENV CONDA_PLATFORM=linux-64
---> Using cache
---> e08ab9ecdf63
Step 22/50 : ENV KERNEL_PYTHON_PREFIX=${NB_PYTHON_PREFIX}
---> Using cache
---> 6e36d241a1f0
Step 23/50 : ENV PATH=${NB_PYTHON_PREFIX}/bin:${CONDA_DIR}/bin:${NPM_DIR}/bin:${PATH}
---> Using cache
---> d8b86258d539
Step 24/50 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2factivate-2dconda-2esh-44e764 /etc/profile.d/activate-conda.sh
---> Using cache
---> 0602fd7ec4e4
Step 25/50 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2fenvironment-2epy-2d3-2e9-2dlinux-2d64-2elock-3652dd /tmp/env/environment.lock
---> Using cache
---> 20462bf2fa90
Step 26/50 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2finstall-2dbase-2denv-2ebash-e5509f /tmp/install-base-env.bash
---> Using cache
---> 788b7ec92499
Step 27/50 : RUN TIMEFORMAT='time: %3R' bash -c 'time /tmp/install-base-env.bash' && rm -rf /tmp/install-base-env.bash /tmp/env
---> Using cache
---> 4bd91576a89a
Step 28/50 : RUN mkdir -p ${NPM_DIR} && chown -R ${NB_USER}:${NB_USER} ${NPM_DIR}
---> Using cache
---> ae103b857fa3
Step 29/50 : USER root
---> Using cache
---> d6479f3b314f
Step 30/50 : ARG REPO_DIR=${HOME}
---> Using cache
---> deeb7dca9e0e
Step 31/50 : ENV REPO_DIR=${REPO_DIR}
---> Using cache
---> 68cb62dca68a
Step 32/50 : RUN if [ ! -d "${REPO_DIR}" ]; then /usr/bin/install -o ${NB_USER} -g ${NB_USER} -d "${REPO_DIR}"; fi
---> Using cache
---> 0bd27911c5d8
Step 33/50 : WORKDIR ${REPO_DIR}
---> Using cache
---> ba6df163c4cf
Step 34/50 : RUN chown ${NB_USER}:${NB_USER} ${REPO_DIR}
---> Using cache
---> fc27ae85828d
Step 35/50 : ENV PATH=${HOME}/.local/bin:${REPO_DIR}/.local/bin:${PATH}
---> Using cache
---> 763ebc27aa72
Step 36/50 : ENV CONDA_DEFAULT_ENV=${KERNEL_PYTHON_PREFIX}
---> Using cache
---> bdde68f97bbf
Step 37/50 : COPY --chown=1000:1000 src/binder/environment.yml ${REPO_DIR}/binder/environment.yml
---> Using cache
---> 132ef4e7ee7c
Step 38/50 : USER ${NB_USER}
---> Using cache
---> 9b1c51f304bc
Step 39/50 : RUN TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "binder/environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '
---> Running in 061771c3a46e
Looking for: ['beautifulsoup4=4.11.1', 'feedparser=6.0.8', 'gensim=4.1.2', 'ipywidgets=7.6.5', 'matplotlib=3.5.2', 'networkx=2.8.4', 'numpy=1.21.5', 'openpyxl=3.0.10', 'pandas=1.4.4', 'pip=22.2.2', 'pygraphviz=1.9', 'python=3.9.13', 'requests=2.28.1', 'scikit-learn=1.0.2', 'scipy=1.9.1', 'seaborn=0.11.2', 'selenium=3.141.0', 'spacy=3.3.1', 'sqlalchemy=1.4.39', 'statsmodels=0.13.2', 'textacy=0.11.0', 'xlsxwriter=3.0.3']
Transaction
Prefix: /srv/conda/envs/notebook
Updating specs:
Package Version Build Channel Size
─────────────────────────────────────────────────────────────────────────────────────────────────
Install:
─────────────────────────────────────────────────────────────────────────────────────────────────
Change:
─────────────────────────────────────────────────────────────────────────────────────────────────
Downgrade:
─────────────────────────────────────────────────────────────────────────────────────────────────
Summary:
Install: 136 packages
Change: 2 packages
Downgrade: 13 packages
Total download: 385MB
─────────────────────────────────────────────────────────────────────────────────────────────────
Downloading and Extracting Packages
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working...
Installed package of scikit-learn can be accelerated using scikit-learn-intelex.
More details are available here: https://intel.github.io/scikit-learn-intelex
For example:
$ conda install scikit-learn-intelex
$ python -m sklearnex my_application.py
done
Installing pip dependencies: ...working... Ran pip subprocess with arguments:
['/srv/conda/envs/notebook/bin/python', '-m', 'pip', 'install', '-U', '-r', '/home/jovyan/binder/condaenv.zviij9q3.requirements.txt', '--exists-action=b']
Pip subprocess output:
Collecting emoji==2.2.0
Downloading emoji-2.2.0.tar.gz (240 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 240.9/240.9 kB 6.7 MB/s eta 0:00:00
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Collecting factor-analyzer==0.4.1
Downloading factor_analyzer-0.4.1.tar.gz (41 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 41.8/41.8 kB 9.4 MB/s eta 0:00:00
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Collecting mwparserfromhell==0.6.4
Downloading mwparserfromhell-0.6.4-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (178 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 178.7/178.7 kB 25.4 MB/s eta 0:00:00
Collecting powerlaw==1.5
Downloading powerlaw-1.5-py3-none-any.whl (24 kB)
Collecting pywikibot==8.0.2
Downloading pywikibot-8.0.2-py3-none-any.whl (696 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 696.0/696.0 kB 35.5 MB/s eta 0:00:00
Collecting wikipedia==1.4.0
Downloading wikipedia-1.4.0.tar.gz (27 kB)
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Collecting wikitextparser==0.51.1
Downloading wikitextparser-0.51.1-py3-none-any.whl (65 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 65.9/65.9 kB 10.1 MB/s eta 0:00:00
Requirement already satisfied: scikit-learn in /srv/conda/envs/notebook/lib/python3.9/site-packages (from factor-analyzer==0.4.1->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 2)) (1.0.2)
Requirement already satisfied: scipy in /srv/conda/envs/notebook/lib/python3.9/site-packages (from factor-analyzer==0.4.1->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 2)) (1.9.1)
Requirement already satisfied: pandas in /srv/conda/envs/notebook/lib/python3.9/site-packages (from factor-analyzer==0.4.1->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 2)) (1.4.4)
Collecting pre-commit
Downloading pre_commit-3.2.2-py2.py3-none-any.whl (202 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 202.7/202.7 kB 31.2 MB/s eta 0:00:00
Requirement already satisfied: numpy in /srv/conda/envs/notebook/lib/python3.9/site-packages (from factor-analyzer==0.4.1->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 2)) (1.21.5)
Collecting mpmath
Downloading mpmath-1.3.0-py3-none-any.whl (536 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 536.2/536.2 kB 39.2 MB/s eta 0:00:00
Requirement already satisfied: matplotlib in /srv/conda/envs/notebook/lib/python3.9/site-packages (from powerlaw==1.5->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 4)) (3.5.2)
Requirement already satisfied: setuptools>=40.8.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pywikibot==8.0.2->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 5)) (67.6.1)
Requirement already satisfied: requests>=2.21.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pywikibot==8.0.2->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 5)) (2.28.1)
Requirement already satisfied: beautifulsoup4 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from wikipedia==1.4.0->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 6)) (4.11.1)
Requirement already satisfied: wcwidth in /srv/conda/envs/notebook/lib/python3.9/site-packages (from wikitextparser==0.51.1->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 7)) (0.2.6)
Collecting regex>=2022.9.11
Downloading regex-2023.3.23-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (768 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 769.0/769.0 kB 21.7 MB/s eta 0:00:00
Requirement already satisfied: charset-normalizer<3,>=2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests>=2.21.0->pywikibot==8.0.2->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 5)) (2.0.4)
Requirement already satisfied: idna<4,>=2.5 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests>=2.21.0->pywikibot==8.0.2->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 5)) (3.4)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests>=2.21.0->pywikibot==8.0.2->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 5)) (1.26.15)
Requirement already satisfied: certifi>=2017.4.17 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests>=2.21.0->pywikibot==8.0.2->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 5)) (2022.12.7)
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Collecting virtualenv>=20.10.0
Downloading virtualenv-20.22.0-py3-none-any.whl (3.2 MB)
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Collecting cfgv>=2.0.0
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Collecting identify>=1.0.0
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Collecting nodeenv>=0.11.1
Downloading nodeenv-1.7.0-py2.py3-none-any.whl (21 kB)
Collecting pyyaml>=5.1
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Collecting filelock<4,>=3.11
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Building wheels for collected packages: emoji, factor-analyzer, wikipedia
Building wheel for emoji (setup.py): started
Building wheel for emoji (setup.py): finished with status 'done'
Created wheel for emoji: filename=emoji-2.2.0-py3-none-any.whl size=234911 sha256=5056791ada7d91535b50e65b442b22eda90f324e3526638e45783f2eb5970816
Stored in directory: /home/jovyan/.cache/pip/wheels/9a/b8/0f/f580817231cbf59f6ade9fd132ff60ada1de9f7dc85521f857
Building wheel for factor-analyzer (pyproject.toml): started
Building wheel for factor-analyzer (pyproject.toml): finished with status 'done'
Created wheel for factor-analyzer: filename=factor_analyzer-0.4.1-py2.py3-none-any.whl size=42014 sha256=7810768afdf3beb4a2dab57424aef9b5ab185b030f936b08389cb5379aca5d1b
Stored in directory: /home/jovyan/.cache/pip/wheels/6d/32/bd/460a71becd83f7d77152f437c2fd451f5c87bc19cfcdbfcd24
Building wheel for wikipedia (setup.py): started
Building wheel for wikipedia (setup.py): finished with status 'done'
Created wheel for wikipedia: filename=wikipedia-1.4.0-py3-none-any.whl size=11680 sha256=96530d75c964089e6f420a7fad8e008ccc8001ea98c83f62822e43b82119f6d9
Stored in directory: /home/jovyan/.cache/pip/wheels/c2/46/f4/caa1bee71096d7b0cdca2f2a2af45cacf35c5760bee8f00948
Successfully built emoji factor-analyzer wikipedia
Installing collected packages: mpmath, distlib, regex, pyyaml, nodeenv, mwparserfromhell, identify, filelock, emoji, cfgv, wikitextparser, wikipedia, virtualenv, pywikibot, pre-commit, powerlaw, factor-analyzer
Successfully installed cfgv-3.3.1 distlib-0.3.6 emoji-2.2.0 factor-analyzer-0.4.1 filelock-3.12.0 identify-2.5.23 mpmath-1.3.0 mwparserfromhell-0.6.4 nodeenv-1.7.0 powerlaw-1.5 pre-commit-3.2.2 pywikibot-8.0.2 pyyaml-6.0 regex-2023.3.23 virtualenv-20.22.0 wikipedia-1.4.0 wikitextparser-0.51.1
done
time: 205.324
Will remove 1 package cache(s).
time: 2.353
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soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
spacy 3.3.1 py39h79cecc1_0 defaults
spacy-legacy 3.0.9 py39h06a4308_0 defaults
spacy-loggers 1.0.1 pyhd3eb1b0_0 defaults
sqlalchemy 1.4.39 py39h5eee18b_0 defaults
sqlite 3.40.1 h5082296_0 defaults
srsly 2.4.6 py39h6a678d5_0 defaults
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
statsmodels 0.13.2 py39h7f8727e_0 defaults
terminado 0.17.1 pyh41d4057_0 conda-forge
textacy 0.11.0 py39hf3d152e_1 conda-forge
thinc 8.0.15 py39hae6d005_0 defaults
threadpoolctl 2.2.0 pyh0d69192_0 defaults
tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
toolz 0.12.0 py39h06a4308_0 defaults
tornado 6.2 py39hb9d737c_1 conda-forge
tqdm 4.65.0 py39hb070fc8_0 defaults
traitlets 5.9.0 pyhd8ed1ab_0 conda-forge
typer 0.4.1 py39h06a4308_0 defaults
typing-extensions 4.5.0 hd8ed1ab_0 conda-forge
typing_extensions 4.5.0 pyha770c72_0 conda-forge
tzdata 2023c h71feb2d_0 conda-forge
urllib3 1.26.15 pyhd8ed1ab_0 conda-forge
virtualenv 20.22.0 pypi_0 pypi
wasabi 0.9.1 py39h06a4308_0 defaults
wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 py_1 conda-forge
websocket-client 1.5.1 pyhd8ed1ab_0 conda-forge
wheel 0.40.0 pyhd8ed1ab_0 conda-forge
widgetsnbextension 3.5.2 py39h06a4308_0 defaults
wikipedia 1.4.0 pypi_0 pypi
wikitextparser 0.51.1 pypi_0 pypi
xlsxwriter 3.0.3 pyhd3eb1b0_0 defaults
xz 5.2.6 h166bdaf_0 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zipp 3.15.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h166bdaf_4 conda-forge
zstd 1.5.2 ha4553b6_0 defaults
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A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.