Open Research Computing v2
Home Page: https://notebooks.gesis.org/
License: MIT License
Production server at https://notebooks.gesis.org.
Test server at https://notebooks-test.gesis.org.
Developer documentation at https://gesiscss.github.io/orc2/.
Primary: https://git.gesis.org/ilcm/orc2
Mirror: https://github.com/gesiscss/orc2
@minrk the binder pod log shows
[E 230427 11:46:49 ioloop:760] Exception in callback functools.partial(<bound method IOLoop._discard_future_result of <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7efe39274d90>>, <Task finished name='Task-3705' coro=<Launcher.launch.<locals>.handle_chunk() done, defined at /usr/local/lib/python3.11/site-packages/binderhub/launcher.py:279> exception=Finish()>)
Traceback (most recent call last):
File "/usr/local/lib/python3.11/site-packages/binderhub/builder.py", line 159, in emit
await self.flush()
tornado.iostream.StreamClosedError: Stream is closed
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.11/site-packages/tornado/ioloop.py", line 740, in _run_callback
ret = callback()
^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/tornado/ioloop.py", line 764, in _discard_future_result
future.result()
File "/usr/local/lib/python3.11/site-packages/binderhub/launcher.py", line 291, in handle_chunk
await event_callback(event)
File "/usr/local/lib/python3.11/site-packages/binderhub/builder.py", line 630, in handle_progress_event
await self.emit(
File "/usr/local/lib/python3.11/site-packages/binderhub/builder.py", line 163, in emit
raise Finish()
tornado.web.Finish
[E 230427 11:46:49 ioloop:760] Exception in callback functools.partial(<bound method IOLoop._discard_future_result of <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7efe39274d90>>, <Task finished name='Task-3706' coro=<Launcher.launch.<locals>.handle_chunk() done, defined at /usr/local/lib/python3.11/site-packages/binderhub/launcher.py:279> exception=Finish()>)
Traceback (most recent call last):
File "/usr/local/lib/python3.11/site-packages/binderhub/builder.py", line 159, in emit
await self.flush()
tornado.iostream.StreamClosedError: Stream is closed
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.11/site-packages/tornado/ioloop.py", line 740, in _run_callback
ret = callback()
^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/tornado/ioloop.py", line 764, in _discard_future_result
future.result()
File "/usr/local/lib/python3.11/site-packages/binderhub/launcher.py", line 291, in handle_chunk
Do you knwo what it could be?
I try to construct a direct launch link as instructed by the FAQ:
https://notebooks.gesis.org/binder/v2/gh/illinois-ceesd/NCSA-WEST/HEAD
However the page at which I arrive only tells me: "Failed to connect to event stream". The same repo, launched via manual input on the front page launches just fine. What am I missing? Thanks in advance for the help, and thanks for hosting GESIS notebooks. (I do admit I'm not a social scientist... but I do work at a university. I hope that counts? 🙂 )
[W 2023-04-28 08:57:40.145 JupyterHub base:1030] 2 consecutive spawns failed. Hub will exit if failure count reaches 5 before succeeding
[E 2023-04-28 08:57:40.145 JupyterHub gen:630] Exception in Future <Task finished name='Task-15076' coro=<BaseHandler.spawn_single_user.<locals>.finish_user_spawn() done, defined at /usr/local/lib/python3.9/site-packages/jupyterhub/handlers/base.py:954> exception=TimeoutError('pod gesis/jupyter-astrobiomike-2dbinder-2dr-2dbasics-2djff8k1ry did not start in 300 seconds!')> after timeout
Traceback (most recent call last):
File "/usr/local/lib/python3.9/site-packages/tornado/gen.py", line 625, in error_callback
future.result()
File "/usr/local/lib/python3.9/site-packages/jupyterhub/handlers/base.py", line 961, in finish_user_spawn
await spawn_future
File "/usr/local/lib/python3.9/site-packages/jupyterhub/user.py", line 850, in spawn
raise e
File "/usr/local/lib/python3.9/site-packages/jupyterhub/user.py", line 747, in spawn
url = await gen.with_timeout(timedelta(seconds=spawner.start_timeout), f)
File "/usr/local/lib/python3.9/site-packages/kubespawner/spawner.py", line 2732, in _start
await exponential_backoff(
File "/usr/local/lib/python3.9/site-packages/jupyterhub/utils.py", line 236, in exponential_backoff
raise asyncio.TimeoutError(fail_message)
asyncio.exceptions.TimeoutError: pod gesis/jupyter-astrobiomike-2dbinder-2dr-2dbasics-2djff8k1ry did not start in 300 seconds!
@minrk should I report this upstream to JupyterHub?
repo2docker failed to build https://github.com/gesiscss/orc2-test-build.
Waiting for build to start...
Picked Git content provider.
Cloning into '/tmp/repo2docker4np30dll'...
HEAD is now at dfd0418 Create main.txt
failed to create fsnotify watcher: too many open files
repo2docker build container successfuly.
URL with https://github.com/gesiscss/orc2-test-buildlaunchURL with https://github.com/gesiscss/orc2-test-buildlaunchresulted in no issue.
I saw the following a couple of times in JupyterHub logs:
[W 2023-04-28 08:55:19.973 JupyterHub user:824] petlja-analizapodatakagim2-zj9cxrbg's server failed to start in 300 seconds, giving up.
Common causes of this timeout, and debugging tips:
1. Everything is working, but it took too long.
To fix: increase `Spawner.start_timeout` configuration
to a number of seconds that is enough for spawners to finish starting.
2. The server didn't finish starting,
or it crashed due to a configuration issue.
Check the single-user server's logs for hints at what needs fixing.
https://notebooks.gesis.org/binder/health returns
{"ok": true, "checks": [{"service": "Docker registry", "ok": true}, {"service": "JupyterHub API", "ok": true}, {"service": "Pod quota", "total_pods": 70, "build_pods": 9, "user_pods": 61, "quota": 120, "ok": true, "_ignore_failure": true}]}For https://notebooks.gesis.org/binder/v2/gh/socialcomquant/css_methods_python_workshop/HEAD
Found built image, launching...
Launching server...
Server requested
2023-05-03T17:51:34.250477Z [Normal] Successfully assigned gesis/jupyter-socialcomquant-2d-2dpython-5fworkshop-2d2snkwx5o to spko-css-app03
2023-05-03T17:51:35Z [Normal] Container image "jupyterhub/k8s-network-tools:2.0.0" already present on machine
2023-05-03T17:51:35Z [Normal] Created container block-cloud-metadata
2023-05-03T17:51:35Z [Normal] Started container block-cloud-metadata
2023-05-03T17:51:36Z [Normal] Pulling image "gesiscss/binder-r2d-g5b5b759-socialcomquant-2dcss-5fmethods-5fpython-5fworkshop-07544b:c676e582f426545ad89a916c28d9ae2a2927caa5"
2023-05-03T17:51:47Z [Warning] Failed to pull image "gesiscss/binder-r2d-g5b5b759-socialcomquant-2dcss-5fmethods-5fpython-5fworkshop-07544b:c676e582f426545ad89a916c28d9ae2a2927caa5": rpc error: code = Unknown desc = failed to pull and unpack image "docker.io/gesiscss/binder-r2d-g5b5b759-socialcomquant-2dcss-5fmethods-5fpython-5fworkshop-07544b:c676e582f426545ad89a916c28d9ae2a2927caa5": failed to copy: httpReadSeeker: failed open: unexpected status code https://registry-1.docker.io/v2/gesiscss/binder-r2d-g5b5b759-socialcomquant-2dcss-5fmethods-5fpython-5fworkshop-07544b/manifests/sha256:47987f82a70799e392db0a972cfe99ee166242addc55755e927dbc098a312d54: 429 Too Many Requests - Server message: toomanyrequests: You have reached your pull rate limit. You may increase the limit by authenticating and upgrading: https://www.docker.com/increase-rate-limit
2023-05-03T17:51:47Z [Warning] Error: ErrImagePull
2023-05-03T17:51:48Z [Normal] Back-off pulling image "gesiscss/binder-r2d-g5b5b759-socialcomquant-2dcss-5fmethods-5fpython-5fworkshop-07544b:c676e582f426545ad89a916c28d9ae2a2927caa5"
2023-05-03T17:51:48Z [Warning] Error: ImagePullBackOff
In the GESIS Notebooks FAQ (https://notebooks.gesis.org/faq.html) the persistent Notebook option: "https://notebooks.gesis.org/services/binder/v2/gh/github_account_name/repository_name/HEAD" does not work.
gh/arnimtest/PHYS2015_2023/HEAD
Waiting for build to start...
Picked Git content provider.
Cloning into '/tmp/repo2dockeryvjnszfy'...
HEAD is now at 5dafaa7 added question on dominant component of spectrum
Building conda environment for python=3.9
Using CondaBuildPack builder
Step 1/50 : FROM docker.io/library/buildpack-deps:bionic
---> 0f137f206fa8
Step 2/50 : ENV DEBIAN_FRONTEND=noninteractive
---> Using cache
---> 5adb5d4213f3
Step 3/50 : RUN apt-get -qq update && apt-get -qq install --yes --no-install-recommends locales > /dev/null && apt-get -qq purge && apt-get -qq clean && rm -rf /var/lib/apt/lists/*
---> Using cache
---> 3f73fc804dae
Step 4/50 : RUN echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && locale-gen
---> Using cache
---> cc154af39a10
Step 5/50 : ENV LC_ALL=en_US.UTF-8 LANG=en_US.UTF-8 LANGUAGE=en_US.UTF-8
---> Using cache
---> 6eddaa9e4a0f
Step 6/50 : ENV SHELL=/bin/bash
---> Using cache
---> 0ec930b315d1
Step 7/50 : ARG NB_USER
---> Using cache
---> 0b1fdf7dc1a6
Step 8/50 : ARG NB_UID
---> Using cache
---> 808e307d5962
Step 9/50 : ENV USER=${NB_USER} HOME=/home/${NB_USER}
---> Using cache
---> 99c51a4ef002
Step 10/50 : RUN groupadd --gid ${NB_UID} ${NB_USER} && useradd --comment "Default user" --create-home --gid ${NB_UID} --no-log-init --shell /bin/bash --uid ${NB_UID} ${NB_USER}
---> Using cache
---> 55c36f280197
Step 11/50 : RUN apt-get -qq update && apt-get -qq install --yes --no-install-recommends gettext-base less unzip > /dev/null && apt-get -qq purge && apt-get -qq clean && rm -rf /var/lib/apt/lists/*
---> Using cache
---> 9976c2a6dd60
Step 12/50 : EXPOSE 8888
---> Using cache
---> 1e3b2169dcd2
Step 13/50 : ENV APP_BASE=/srv
---> Using cache
---> 070d1f82f7d8
Step 14/50 : ENV CONDA_DIR=${APP_BASE}/conda
---> Using cache
---> 0789f5d70008
Step 15/50 : ENV NB_PYTHON_PREFIX=${CONDA_DIR}/envs/notebook
---> Using cache
---> 89e05983b3d4
Step 16/50 : ENV NPM_DIR=${APP_BASE}/npm
---> Using cache
---> d9ab9faeede3
Step 17/50 : ENV NPM_CONFIG_GLOBALCONFIG=${NPM_DIR}/npmrc
---> Using cache
---> 5333033100a9
Step 18/50 : ENV NB_ENVIRONMENT_FILE=/tmp/env/environment.lock
---> Using cache
---> 87b6194588b4
Step 19/50 : ENV MAMBA_ROOT_PREFIX=${CONDA_DIR}
---> Using cache
---> ccc3cc01fd42
Step 20/50 : ENV MAMBA_EXE=${CONDA_DIR}/bin/mamba
---> Using cache
---> a99a3e8425e5
Step 21/50 : ENV CONDA_PLATFORM=linux-64
---> Using cache
---> 3801a3a9ba44
Step 22/50 : ENV KERNEL_PYTHON_PREFIX=${NB_PYTHON_PREFIX}
---> Using cache
---> 6f08e6d75dc4
Step 23/50 : ENV PATH=${NB_PYTHON_PREFIX}/bin:${CONDA_DIR}/bin:${NPM_DIR}/bin:${PATH}
---> Using cache
---> 48b7e0dcee04
Step 24/50 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2factivate-2dconda-2esh-44e764 /etc/profile.d/activate-conda.sh
---> Using cache
---> f65ff4395ebe
Step 25/50 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2fenvironment-2epy-2d3-2e9-2dlinux-2d64-2elock-3652dd /tmp/env/environment.lock
---> Using cache
---> 280a861b85b9
Step 26/50 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2finstall-2dbase-2denv-2ebash-e5509f /tmp/install-base-env.bash
---> Using cache
---> 91cb5c1566c3
Step 27/50 : RUN TIMEFORMAT='time: %3R' bash -c 'time /tmp/install-base-env.bash' && rm -rf /tmp/install-base-env.bash /tmp/env
---> Using cache
---> 03f023cf8458
Step 28/50 : RUN mkdir -p ${NPM_DIR} && chown -R ${NB_USER}:${NB_USER} ${NPM_DIR}
---> Using cache
---> c1c97c7ae67f
Step 29/50 : USER root
---> Using cache
---> c346d5c23480
Step 30/50 : ARG REPO_DIR=${HOME}
---> Using cache
---> d69cc60b9605
Step 31/50 : ENV REPO_DIR=${REPO_DIR}
---> Using cache
---> 015782bd9de2
Step 32/50 : RUN if [ ! -d "${REPO_DIR}" ]; then /usr/bin/install -o ${NB_USER} -g ${NB_USER} -d "${REPO_DIR}"; fi
---> Using cache
---> 993a8c553601
Step 33/50 : WORKDIR ${REPO_DIR}
---> Using cache
---> df8fa9dcbc76
Step 34/50 : RUN chown ${NB_USER}:${NB_USER} ${REPO_DIR}
---> Using cache
---> 684384e6a516
Step 35/50 : ENV PATH=${HOME}/.local/bin:${REPO_DIR}/.local/bin:${PATH}
---> Using cache
---> 597e3f89e235
Step 36/50 : ENV CONDA_DEFAULT_ENV=${KERNEL_PYTHON_PREFIX}
---> Using cache
---> 7f4db92a75fa
Step 37/50 : COPY --chown=1000:1000 src/environment.yml ${REPO_DIR}/environment.yml
---> ba0e9a880323
Step 38/50 : USER ${NB_USER}
---> Running in 2cd99d86d9e8
Removing intermediate container 2cd99d86d9e8
---> fb3326ec4fc7
Step 39/50 : RUN TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '
---> Running in 048b18990976
Looking for: ['python=3.9', "fermitools[version='>=2.2.0']", 'healpy', 'gammapy', 'pip']
Transaction
Prefix: /srv/conda/envs/notebook
Updating specs:
- fermitools[version='>=2.2.0']
- healpy
- gammapy
- python=3.9
- pip
Package Version Build Channel Size
───────────────────────────────────────────────────────────────────────────────────────────
Install:
───────────────────────────────────────────────────────────────────────────────────────────
+ clhep 2.4.5.3 h27087fc_0 conda-forge 39MB
+ zstd 1.5.5 hfc55251_0 conda-forge 545kB
+ keyutils 1.6.1 h166bdaf_0 conda-forge 118kB
+ libgfortran5 13.2.0 ha4646dd_0 conda-forge 1MB
+ f2c 20210323183018 h166bdaf_1010 conda-forge 281kB
+ alsa-lib 1.2.9 hd590300_0 conda-forge 547kB
+ libexpat 2.5.0 hcb278e6_1 conda-forge 78kB
+ xorg-libice 1.1.1 hd590300_0 conda-forge 58kB
+ gettext 0.21.1 h27087fc_0 conda-forge 4MB
+ xorg-libxau 1.0.11 hd590300_0 conda-forge 14kB
+ libiconv 1.17 h166bdaf_0 conda-forge 1MB
+ c-ares 1.20.1 hd590300_0 conda-forge 115kB
+ libev 4.33 h516909a_1 conda-forge 106kB
+ pcre2 10.40 hc3806b6_0 conda-forge 2MB
+ libogg 1.3.4 h7f98852_1 conda-forge 211kB
+ libopus 1.3.1 h7f98852_1 conda-forge 261kB
+ libpng 1.6.39 h753d276_0 conda-forge 283kB
+ pixman 0.42.2 h59595ed_0 conda-forge 385kB
+ xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge 30kB
+ libjpeg-turbo 2.1.5.1 hd590300_1 conda-forge 496kB
+ nspr 4.35 h27087fc_0 conda-forge 227kB
+ lerc 4.0.0 h27087fc_0 conda-forge 282kB
+ libdeflate 1.19 hd590300_0 conda-forge 67kB
+ libwebp-base 1.3.2 hd590300_0 conda-forge 402kB
+ lz4-c 1.9.4 hcb278e6_0 conda-forge 143kB
+ lame 3.100 h166bdaf_1003 conda-forge 508kB
+ mpg123 1.32.3 h59595ed_0 conda-forge 492kB
+ attr 2.5.1 h166bdaf_1 conda-forge 71kB
+ libedit 3.1.20191231 he28a2e2_2 conda-forge 124kB
+ graphite2 1.3.13 h58526e2_1001 conda-forge 105kB
+ cppunit 1.15.1 h9c3ff4c_0 conda-forge 273kB
+ xorg-renderproto 0.11.1 h7f98852_1002 conda-forge 10kB
+ xorg-kbproto 1.0.7 h7f98852_1002 conda-forge 27kB
+ xorg-xproto 7.0.31 h7f98852_1007 conda-forge 75kB
+ xorg-xf86vidmodeproto 2.3.1 h7f98852_1002 conda-forge 24kB
+ pthread-stubs 0.4 h36c2ea0_1001 conda-forge 6kB
+ xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge 19kB
+ mysql-common 8.0.33 hf1915f5_5 conda-forge 758kB
+ libevent 2.1.12 hf998b51_1 conda-forge 427kB
+ libssh2 1.11.0 h0841786_0 conda-forge 271kB
+ libgfortran-ng 13.2.0 h69a702a_0 conda-forge 23kB
+ expat 2.5.0 hcb278e6_1 conda-forge 137kB
+ xorg-libsm 1.2.4 h7391055_0 conda-forge 27kB
+ libgpg-error 1.47 h71f35ed_0 conda-forge 261kB
+ libxml2 2.11.5 h0d562d8_0 conda-forge 705kB
+ libnghttp2 1.52.0 h61bc06f_0 conda-forge 622kB
+ libglib 2.78.0 hebfc3b9_0 conda-forge 3MB
+ libvorbis 1.3.7 h9c3ff4c_0 conda-forge 286kB
+ libflac 1.4.3 h59595ed_0 conda-forge 394kB
+ freetype 2.12.1 h267a509_2 conda-forge 635kB
+ nss 3.94 h1d7d5a4_0 conda-forge 2MB
+ libtiff 4.6.0 h29866fb_1 conda-forge 277kB
+ libcap 2.69 h0f662aa_0 conda-forge 101kB
+ krb5 1.21.2 h659d440_0 conda-forge 1MB
+ libxcb 1.15 h0b41bf4_0 conda-forge 384kB
+ mysql-libs 8.0.33 hca2cd23_5 conda-forge 2MB
+ libopenblas 0.3.24 pthreads_h413a1c8_0 conda-forge 5MB
+ fftw 3.3.10 nompi_hc118613_108 conda-forge 2MB
+ libgcrypt 1.10.1 h166bdaf_0 conda-forge 720kB
+ libllvm15 15.0.7 h5cf9203_3 conda-forge 33MB
+ dbus 1.13.6 h5008d03_3 conda-forge 619kB
+ glib-tools 2.78.0 hfc55251_0 conda-forge 112kB
+ libsndfile 1.2.2 hc60ed4a_1 conda-forge 354kB
+ fontconfig 2.14.2 h14ed4e7_0 conda-forge 272kB
+ lcms2 2.15 h7f713cb_2 conda-forge 241kB
+ openjpeg 2.5.0 h488ebb8_3 conda-forge 357kB
+ libpq 15.4 hfc447b1_2 conda-forge 3MB
+ libcups 2.3.3 h4637d8d_4 conda-forge 5MB
+ libcurl 8.4.0 hca28451_0 conda-forge 386kB
+ xcb-util-wm 0.4.1 h8ee46fc_1 conda-forge 52kB
+ xcb-util-keysyms 0.4.0 h8ee46fc_1 conda-forge 14kB
+ xcb-util 0.4.0 hd590300_1 conda-forge 20kB
+ xorg-libx11 1.8.7 h8ee46fc_0 conda-forge 829kB
+ xcb-util-renderutil 0.3.9 hd590300_1 conda-forge 17kB
+ libblas 3.9.0 18_linux64_openblas conda-forge 15kB
+ libsystemd0 254 h3516f8a_0 conda-forge 400kB
+ libclang13 15.0.7 default_h9986a30_3 conda-forge 10MB
+ xerces-c 3.2.4 h8d71039_2 conda-forge 2MB
+ cfitsio 4.1.0 hd9d235c_0 conda-forge 1MB
+ xcb-util-image 0.4.0 h8ee46fc_1 conda-forge 24kB
+ pgplot 5.2.2 hf4b3394_1008 conda-forge 270kB
+ xkeyboard-config 2.40 hd590300_0 conda-forge 896kB
+ xorg-libxext 1.3.4 h0b41bf4_2 conda-forge 50kB
+ xorg-libxrender 0.9.11 hd590300_0 conda-forge 38kB
+ libcblas 3.9.0 18_linux64_openblas conda-forge 14kB
+ liblapack 3.9.0 18_linux64_openblas conda-forge 14kB
+ pulseaudio-client 16.1 hb77b528_5 conda-forge 755kB
+ libclang 15.0.7 default_h7634d5b_3 conda-forge 133kB
+ healpix_cxx 3.31 h268b298_1007 conda-forge 621kB
+ wcslib 7.12 h6195f97_0 conda-forge 1MB
+ libxkbcommon 1.6.0 h5d7e998_0 conda-forge 573kB
+ gsl 2.7 he838d99_0 conda-forge 3MB
+ fermitools-data 0.18 0 fermi 497MB
+ font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge 397kB
+ font-ttf-inconsolata 3.000 h77eed37_0 conda-forge 97kB
+ font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge 701kB
+ font-ttf-ubuntu 0.83 hab24e00_0 conda-forge 2MB
+ fonts-conda-forge 1 0 conda-forge 4kB
+ ply 3.11 py_1 conda-forge 45kB
+ toml 0.10.2 pyhd8ed1ab_0 conda-forge 18kB
+ iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge 11kB
+ pluggy 1.3.0 pyhd8ed1ab_0 conda-forge 23kB
+ colorama 0.4.6 pyhd8ed1ab_0 conda-forge 25kB
+ munkres 1.1.4 pyh9f0ad1d_0 conda-forge 12kB
+ pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge 90kB
+ cycler 0.12.1 pyhd8ed1ab_0 conda-forge 13kB
+ annotated-types 0.6.0 pyhd8ed1ab_0 conda-forge 17kB
+ importlib-resources 5.12.0 pyhd8ed1ab_0 conda-forge 9kB
+ click 8.1.7 unix_pyh707e725_0 conda-forge 84kB
+ fonts-conda-ecosystem 1 0 conda-forge 4kB
+ pytest 7.4.2 pyhd8ed1ab_0 conda-forge 245kB
+ pytest-runner 6.0.0 pyhd8ed1ab_0 conda-forge 11kB
+ numpy 1.26.0 py39h474f0d3_0 conda-forge 7MB
+ unicodedata2 15.1.0 py39hd1e30aa_0 conda-forge 374kB
+ glib 2.78.0 hfc55251_0 conda-forge 491kB
+ pillow 10.0.1 py39h444a776_1 conda-forge 46MB
+ kiwisolver 1.4.5 py39h7633fee_1 conda-forge 73kB
+ pmw 2.0.1 py39hf3d152e_1008 conda-forge 524kB
+ pydantic-core 2.10.1 py39h9fdd4d6_0 conda-forge 2MB
+ sip 6.7.11 py39h3d6467e_1 conda-forge 490kB
+ cairo 1.16.0 hbbf8b49_1016 conda-forge 1MB
+ contourpy 1.1.1 py39h7633fee_1 conda-forge 224kB
+ pyerfa 2.0.0.3 py39h44dd56e_1 conda-forge 354kB
+ scipy 1.11.3 py39h474f0d3_1 conda-forge 15MB
+ iminuit 2.24.0 py39h3d6467e_0 conda-forge 413kB
+ fonttools 4.43.1 py39hd1e30aa_0 conda-forge 2MB
+ gstreamer 1.22.5 h98fc4e7_0 conda-forge 2MB
+ pyqt5-sip 12.12.2 py39h3d6467e_5 conda-forge 85kB
+ harfbuzz 7.3.0 hdb3a94d_0 conda-forge 1MB
+ astropy 5.3.4 py39h44dd56e_2 conda-forge 8MB
+ matplotlib-base 3.8.0 py39he9076e7_1 conda-forge 7MB
+ gst-plugins-base 1.22.5 hf7dbed1_0 conda-forge 3MB
+ regions 0.7 py39h44dd56e_3 conda-forge 296kB
+ healpy 1.16.1 py39hbafa5a2_2 conda-forge 4MB
+ qt-main 5.15.8 h7fe3ca9_15 conda-forge 61MB
+ pyqt 5.15.9 py39h52134e7_5 conda-forge 5MB
+ matplotlib 3.8.0 py39hf3d152e_2 conda-forge 8kB
+ pydantic 2.4.2 pyhd8ed1ab_0 conda-forge 275kB
+ fermitools 2.2.0 py39h93a0a19_0 fermi 94MB
+ gammapy 1.1 py39h0f8d45d_0 conda-forge 1MB
Upgrade:
───────────────────────────────────────────────────────────────────────────────────────────
- libsqlite 3.42.0 h2797004_0 conda-forge
+ libsqlite 3.43.2 h2797004_0 conda-forge 840kB
- openssl 3.1.1 hd590300_1 conda-forge
+ openssl 3.1.3 hd590300_0 conda-forge 3MB
- python 3.9.16 h2782a2a_0_cpython conda-forge
+ python 3.9.18 h0755675_0_cpython conda-forge 24MB
- pip 23.1.2 pyhd8ed1ab_0 conda-forge
+ pip 23.2.1 pyhd8ed1ab_0 conda-forge 1MB
Summary:
Install: 140 packages
Upgrade: 4 packages
Total download: 934MB
───────────────────────────────────────────────────────────────────────────────────────────
Downloading and Extracting Packages
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Installing pip dependencies: ...working... Ran pip subprocess with arguments:
['/srv/conda/envs/notebook/bin/python', '-m', 'pip', 'install', '-U', '-r', '/home/jovyan/condaenv.rqcgi6ru.requirements.txt', '--exists-action=b']
Pip subprocess output:
Collecting fermipy (from -r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1))
Downloading fermipy-1.2.0-py3-none-any.whl (45.8 MB)
���������������������������������������� 45.8/45.8 MB 3.5 MB/s eta 0:00:00
Collecting gdown (from -r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2))
Downloading gdown-4.7.1-py3-none-any.whl (15 kB)
Requirement already satisfied: numpy>=1.16 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (1.26.0)
Requirement already satisfied: pyyaml in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (6.0)
Requirement already satisfied: scipy in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (1.11.3)
Requirement already satisfied: astropy in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (5.3.4)
Requirement already satisfied: matplotlib>=3.3 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (3.8.0)
Requirement already satisfied: gammapy>=0.18 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (1.1)
Requirement already satisfied: healpy in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (1.16.1)
Collecting astropy-healpix (from fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1))
Obtaining dependency information for astropy-healpix from https://files.pythonhosted.org/packages/1f/5b/519412b0e0c1c61183d3dcb982206f3ffd3411bed3a6efdad395844bbb71/astropy_healpix-1.0.0-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata
Downloading astropy_healpix-1.0.0-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.1 kB)
Collecting filelock (from gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2))
Obtaining dependency information for filelock from https://files.pythonhosted.org/packages/5e/5d/97afbafd9d584ff1b45fcb354a479a3609bd97f912f8f1f6c563cb1fae21/filelock-3.12.4-py3-none-any.whl.metadata
Downloading filelock-3.12.4-py3-none-any.whl.metadata (2.8 kB)
Requirement already satisfied: requests[socks] in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (2.31.0)
Requirement already satisfied: six in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (1.16.0)
Collecting tqdm (from gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2))
Obtaining dependency information for tqdm from https://files.pythonhosted.org/packages/00/e5/f12a80907d0884e6dff9c16d0c0114d81b8cd07dc3ae54c5e962cc83037e/tqdm-4.66.1-py3-none-any.whl.metadata
Downloading tqdm-4.66.1-py3-none-any.whl.metadata (57 kB)
��������������������������������������� 57.6/57.6 kB 179.7 kB/s eta 0:00:00
Requirement already satisfied: beautifulsoup4 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (4.12.2)
Requirement already satisfied: regions>=0.5.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (0.7)
Requirement already satisfied: click>=7.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (8.1.7)
Requirement already satisfied: pydantic>=1.4 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (2.4.2)
Requirement already satisfied: iminuit>=2.8.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (2.24.0)
Requirement already satisfied: pyerfa>=2.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from astropy->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (2.0.0.3)
Requirement already satisfied: packaging>=19.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from astropy->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (23.1)
Requirement already satisfied: contourpy>=1.0.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (1.1.1)
Requirement already satisfied: cycler>=0.10 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (0.12.1)
Requirement already satisfied: fonttools>=4.22.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (4.43.1)
Requirement already satisfied: kiwisolver>=1.0.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (1.4.5)
Requirement already satisfied: pillow>=6.2.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (10.0.1)
Requirement already satisfied: pyparsing>=2.3.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (3.1.1)
Requirement already satisfied: python-dateutil>=2.7 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (2.8.2)
Requirement already satisfied: importlib-resources>=3.2.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (5.12.0)
Requirement already satisfied: soupsieve>1.2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from beautifulsoup4->gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (2.3.2.post1)
Requirement already satisfied: charset-normalizer<4,>=2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests[socks]->gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (3.1.0)
Requirement already satisfied: idna<4,>=2.5 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests[socks]->gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (3.4)
Requirement already satisfied: urllib3<3,>=1.21.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests[socks]->gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (2.0.3)
Requirement already satisfied: certifi>=2017.4.17 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests[socks]->gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (2023.5.7)
Requirement already satisfied: PySocks!=1.5.7,>=1.5.6 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests[socks]->gdown->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 2)) (1.7.1)
Requirement already satisfied: zipp>=3.1.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from importlib-resources>=3.2.0->matplotlib>=3.3->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (3.15.0)
Requirement already satisfied: annotated-types>=0.4.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pydantic>=1.4->gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (0.6.0)
Requirement already satisfied: pydantic-core==2.10.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pydantic>=1.4->gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (2.10.1)
Requirement already satisfied: typing-extensions>=4.6.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pydantic>=1.4->gammapy>=0.18->fermipy->-r /home/jovyan/condaenv.rqcgi6ru.requirements.txt (line 1)) (4.6.3)
Downloading astropy_healpix-1.0.0-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (195 kB)
��������������������������������������� 195.8/195.8 kB 166.2 kB/s eta 0:00:00
Downloading filelock-3.12.4-py3-none-any.whl (11 kB)
Downloading tqdm-4.66.1-py3-none-any.whl (78 kB)
���������������������������������������� 78.3/78.3 kB 935.6 kB/s eta 0:00:00
Installing collected packages: tqdm, filelock, gdown, astropy-healpix, fermipy
Successfully installed astropy-healpix-1.0.0 fermipy-1.2.0 filelock-3.12.4 gdown-4.7.1 tqdm-4.66.1
done
#
# To activate this environment, use
#
# $ conda activate /srv/conda/envs/notebook
#
# To deactivate an active environment, use
#
# $ conda deactivate
�[91mtime: 821.482
�[0mWill remove 1 package cache(s).
�[91mtime: 7.210
�[0m# packages in environment at /srv/conda/envs/notebook:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
aiofiles 22.1.0 pyhd8ed1ab_0 conda-forge
aiosqlite 0.19.0 pyhd8ed1ab_0 conda-forge
alembic 1.11.1 pyhd8ed1ab_0 conda-forge
alsa-lib 1.2.9 hd590300_0 conda-forge
annotated-types 0.6.0 pyhd8ed1ab_0 conda-forge
anyio 3.7.0 pyhd8ed1ab_1 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py39hb9d737c_3 conda-forge
astropy 5.3.4 py39h44dd56e_2 conda-forge
astropy-healpix 1.0.0 pypi_0 pypi
asttokens 2.2.1 pyhd8ed1ab_0 conda-forge
async_generator 1.10 py_0 conda-forge
attr 2.5.1 h166bdaf_1 conda-forge
attrs 23.1.0 pyh71513ae_1 conda-forge
babel 2.12.1 pyhd8ed1ab_1 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.12.2 pyha770c72_0 conda-forge
bleach 6.0.0 pyhd8ed1ab_0 conda-forge
blinker 1.6.2 pyhd8ed1ab_0 conda-forge
brotli 1.0.9 h166bdaf_8 conda-forge
brotli-bin 1.0.9 h166bdaf_8 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.20.1 hd590300_0 conda-forge
ca-certificates 2023.5.7 hbcca054_0 conda-forge
cairo 1.16.0 hbbf8b49_1016 conda-forge
certifi 2023.5.7 pyhd8ed1ab_0 conda-forge
certipy 0.1.3 py_0 conda-forge
cffi 1.15.1 py39he91dace_3 conda-forge
cfitsio 4.1.0 hd9d235c_0 conda-forge
charset-normalizer 3.1.0 pyhd8ed1ab_0 conda-forge
clhep 2.4.5.3 h27087fc_0 conda-forge
click 8.1.7 unix_pyh707e725_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
comm 0.1.3 pyhd8ed1ab_0 conda-forge
contourpy 1.1.1 py39h7633fee_1 conda-forge
cppunit 1.15.1 h9c3ff4c_0 conda-forge
cryptography 41.0.1 py39hd4f0224_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_0 conda-forge
dbus 1.13.6 h5008d03_3 conda-forge
debugpy 1.6.7 py39h227be39_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
exceptiongroup 1.1.1 pyhd8ed1ab_0 conda-forge
executing 1.2.0 pyhd8ed1ab_0 conda-forge
expat 2.5.0 hcb278e6_1 conda-forge
f2c 20210323183018 h166bdaf_1010 conda-forge
fermipy 1.2.0 pypi_0 pypi
fermitools 2.2.0 py39h93a0a19_0 fermi
fermitools-data 0.18 0 fermi
fftw 3.3.10 nompi_hc118613_108 conda-forge
filelock 3.12.4 pypi_0 pypi
flit-core 3.9.0 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.2 h14ed4e7_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.43.1 py39hd1e30aa_0 conda-forge
freetype 2.12.1 h267a509_2 conda-forge
gammapy 1.1 py39h0f8d45d_0 conda-forge
gdown 4.7.1 pypi_0 pypi
gettext 0.21.1 h27087fc_0 conda-forge
glib 2.78.0 hfc55251_0 conda-forge
glib-tools 2.78.0 hfc55251_0 conda-forge
graphite2 1.3.13 h58526e2_1001 conda-forge
greenlet 2.0.2 py39h3d6467e_1 conda-forge
gsl 2.7 he838d99_0 conda-forge
gst-plugins-base 1.22.5 hf7dbed1_0 conda-forge
gstreamer 1.22.5 h98fc4e7_0 conda-forge
harfbuzz 7.3.0 hdb3a94d_0 conda-forge
healpix_cxx 3.31 h268b298_1007 conda-forge
healpy 1.16.1 py39hbafa5a2_2 conda-forge
icu 72.1 hcb278e6_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
iminuit 2.24.0 py39h3d6467e_0 conda-forge
importlib-metadata 6.6.0 pyha770c72_0 conda-forge
importlib-resources 5.12.0 pyhd8ed1ab_0 conda-forge
importlib_metadata 6.6.0 hd8ed1ab_0 conda-forge
importlib_resources 5.12.0 pyhd8ed1ab_0 conda-forge
iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge
ipykernel 6.23.1 pyh210e3f2_0 conda-forge
ipython 8.14.0 pyh41d4057_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 8.0.6 pyhd8ed1ab_0 conda-forge
jedi 0.18.2 pyhd8ed1ab_0 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
json5 0.9.5 pyh9f0ad1d_0 conda-forge
jsonschema 4.17.3 pyhd8ed1ab_0 conda-forge
jupyter-offlinenotebook 0.2.2 pyh1d7be83_0 conda-forge
jupyter-resource-usage 0.7.1 pyhd8ed1ab_0 conda-forge
jupyter_client 8.2.0 pyhd8ed1ab_0 conda-forge
jupyter_core 5.3.0 py39hf3d152e_0 conda-forge
jupyter_events 0.6.3 pyhd8ed1ab_0 conda-forge
jupyter_server 1.23.6 pyhd8ed1ab_0 conda-forge
jupyter_server_fileid 0.9.0 pyhd8ed1ab_0 conda-forge
jupyter_server_ydoc 0.8.0 pyhd8ed1ab_0 conda-forge
jupyter_telemetry 0.1.0 pyhd8ed1ab_1 conda-forge
jupyter_ydoc 0.2.4 pyhd8ed1ab_0 conda-forge
jupyterhub-base 3.1.1 pyh2a2186d_0 conda-forge
jupyterhub-singleuser 3.1.1 pyh2a2186d_0 conda-forge
jupyterlab 3.6.4 pyhd8ed1ab_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_server 2.22.1 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 3.0.7 pyhd8ed1ab_1 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.5 py39h7633fee_1 conda-forge
krb5 1.21.2 h659d440_0 conda-forge
lame 3.100 h166bdaf_1003 conda-forge
lcms2 2.15 h7f713cb_2 conda-forge
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libblas 3.9.0 18_linux64_openblas conda-forge
libbrotlicommon 1.0.9 h166bdaf_8 conda-forge
libbrotlidec 1.0.9 h166bdaf_8 conda-forge
libbrotlienc 1.0.9 h166bdaf_8 conda-forge
libcap 2.69 h0f662aa_0 conda-forge
libcblas 3.9.0 18_linux64_openblas conda-forge
libclang 15.0.7 default_h7634d5b_3 conda-forge
libclang13 15.0.7 default_h9986a30_3 conda-forge
libcups 2.3.3 h4637d8d_4 conda-forge
libcurl 8.4.0 hca28451_0 conda-forge
libdeflate 1.19 hd590300_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libevent 2.1.12 hf998b51_1 conda-forge
libexpat 2.5.0 hcb278e6_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libflac 1.4.3 h59595ed_0 conda-forge
libgcc-ng 13.1.0 he5830b7_0 conda-forge
libgcrypt 1.10.1 h166bdaf_0 conda-forge
libgfortran-ng 13.2.0 h69a702a_0 conda-forge
libgfortran5 13.2.0 ha4646dd_0 conda-forge
libglib 2.78.0 hebfc3b9_0 conda-forge
libgomp 13.1.0 he5830b7_0 conda-forge
libgpg-error 1.47 h71f35ed_0 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
libjpeg-turbo 2.1.5.1 hd590300_1 conda-forge
liblapack 3.9.0 18_linux64_openblas conda-forge
libllvm15 15.0.7 h5cf9203_3 conda-forge
libnghttp2 1.52.0 h61bc06f_0 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libogg 1.3.4 h7f98852_1 conda-forge
libopenblas 0.3.24 pthreads_h413a1c8_0 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpng 1.6.39 h753d276_0 conda-forge
libpq 15.4 hfc447b1_2 conda-forge
libsndfile 1.2.2 hc60ed4a_1 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsqlite 3.43.2 h2797004_0 conda-forge
libssh2 1.11.0 h0841786_0 conda-forge
libstdcxx-ng 13.1.0 hfd8a6a1_0 conda-forge
libsystemd0 254 h3516f8a_0 conda-forge
libtiff 4.6.0 h29866fb_1 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libuv 1.44.2 h166bdaf_0 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libwebp-base 1.3.2 hd590300_0 conda-forge
libxcb 1.15 h0b41bf4_0 conda-forge
libxkbcommon 1.6.0 h5d7e998_0 conda-forge
libxml2 2.11.5 h0d562d8_0 conda-forge
libzlib 1.2.13 h166bdaf_4 conda-forge
lz4-c 1.9.4 hcb278e6_0 conda-forge
mako 1.2.4 pyhd8ed1ab_0 conda-forge
markupsafe 2.1.3 py39hd1e30aa_0 conda-forge
matplotlib 3.8.0 py39hf3d152e_2 conda-forge
matplotlib-base 3.8.0 py39he9076e7_1 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
mistune 2.0.5 pyhd8ed1ab_0 conda-forge
mpg123 1.32.3 h59595ed_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mysql-common 8.0.33 hf1915f5_5 conda-forge
mysql-libs 8.0.33 hca2cd23_5 conda-forge
nbclassic 1.0.0 pyhb4ecaf3_1 conda-forge
nbclient 0.8.0 pyhd8ed1ab_0 conda-forge
nbconvert 7.4.0 pyhd8ed1ab_0 conda-forge
nbconvert-core 7.4.0 pyhd8ed1ab_0 conda-forge
nbconvert-pandoc 7.4.0 pyhd8ed1ab_0 conda-forge
nbformat 5.9.0 pyhd8ed1ab_0 conda-forge
ncurses 6.4 hcb278e6_0 conda-forge
nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge
nodejs 18.15.0 h4abf6b9_1 conda-forge
notebook 6.5.4 pyha770c72_0 conda-forge
notebook-shim 0.2.3 pyhd8ed1ab_0 conda-forge
nspr 4.35 h27087fc_0 conda-forge
nss 3.94 h1d7d5a4_0 conda-forge
numpy 1.26.0 py39h474f0d3_0 conda-forge
oauthlib 3.2.2 pyhd8ed1ab_0 conda-forge
openjpeg 2.5.0 h488ebb8_3 conda-forge
openssl 3.1.3 hd590300_0 conda-forge
packaging 23.1 pyhd8ed1ab_0 conda-forge
pamela 1.0.0 py_0 conda-forge
pandoc 2.19.2 h32600fe_2 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
pcre2 10.40 hc3806b6_0 conda-forge
pexpect 4.8.0 pyh1a96a4e_2 conda-forge
pgplot 5.2.2 hf4b3394_1008 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 10.0.1 py39h444a776_1 conda-forge
pip 23.2.1 pyhd8ed1ab_0 conda-forge
pixman 0.42.2 h59595ed_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge
platformdirs 3.5.1 pyhd8ed1ab_0 conda-forge
pluggy 1.3.0 pyhd8ed1ab_0 conda-forge
ply 3.11 py_1 conda-forge
pmw 2.0.1 py39hf3d152e_1008 conda-forge
prometheus_client 0.17.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.38 pyha770c72_0 conda-forge
prompt_toolkit 3.0.38 hd8ed1ab_0 conda-forge
psutil 5.9.5 py39h72bdee0_0 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pulseaudio-client 16.1 hb77b528_5 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydantic 2.4.2 pyhd8ed1ab_0 conda-forge
pydantic-core 2.10.1 py39h9fdd4d6_0 conda-forge
pyerfa 2.0.0.3 py39h44dd56e_1 conda-forge
pygments 2.15.1 pyhd8ed1ab_0 conda-forge
pyjwt 2.7.0 pyhd8ed1ab_0 conda-forge
pyopenssl 23.2.0 pyhd8ed1ab_1 conda-forge
pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge
pyqt 5.15.9 py39h52134e7_5 conda-forge
pyqt5-sip 12.12.2 py39h3d6467e_5 conda-forge
pyrsistent 0.19.3 py39h72bdee0_0 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytest 7.4.2 pyhd8ed1ab_0 conda-forge
pytest-runner 6.0.0 pyhd8ed1ab_0 conda-forge
python 3.9.18 h0755675_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.17.1 pyhd8ed1ab_0 conda-forge
python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge
python_abi 3.9 3_cp39 conda-forge
pytz 2023.3 pyhd8ed1ab_0 conda-forge
pyyaml 6.0 py39hb9d737c_5 conda-forge
pyzmq 25.1.0 py39hb257651_0 conda-forge
qt-main 5.15.8 h7fe3ca9_15 conda-forge
readline 8.2 h8228510_1 conda-forge
regions 0.7 py39h44dd56e_3 conda-forge
requests 2.31.0 pyhd8ed1ab_0 conda-forge
rfc3339-validator 0.1.4 pyhd8ed1ab_0 conda-forge
rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge
ruamel.yaml 0.17.31 py39hd1e30aa_0 conda-forge
ruamel.yaml.clib 0.2.7 py39h72bdee0_1 conda-forge
scipy 1.11.3 py39h474f0d3_1 conda-forge
send2trash 1.8.2 pyh41d4057_0 conda-forge
setuptools 67.7.2 pyhd8ed1ab_0 conda-forge
sip 6.7.11 py39h3d6467e_1 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sniffio 1.3.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
sqlalchemy 2.0.15 py39hd1e30aa_0 conda-forge
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
terminado 0.17.1 pyh41d4057_0 conda-forge
tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tornado 6.3.2 py39hd1e30aa_0 conda-forge
tqdm 4.66.1 pypi_0 pypi
traitlets 5.9.0 pyhd8ed1ab_0 conda-forge
typing-extensions 4.6.3 hd8ed1ab_0 conda-forge
typing_extensions 4.6.3 pyha770c72_0 conda-forge
tzdata 2023c h71feb2d_0 conda-forge
unicodedata2 15.1.0 py39hd1e30aa_0 conda-forge
urllib3 2.0.3 pyhd8ed1ab_0 conda-forge
wcslib 7.12 h6195f97_0 conda-forge
wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 py_1 conda-forge
websocket-client 1.5.2 pyhd8ed1ab_0 conda-forge
wheel 0.40.0 pyhd8ed1ab_0 conda-forge
widgetsnbextension 4.0.7 pyhd8ed1ab_0 conda-forge
xcb-util 0.4.0 hd590300_1 conda-forge
xcb-util-image 0.4.0 h8ee46fc_1 conda-forge
xcb-util-keysyms 0.4.0 h8ee46fc_1 conda-forge
xcb-util-renderutil 0.3.9 hd590300_1 conda-forge
xcb-util-wm 0.4.1 h8ee46fc_1 conda-forge
xerces-c 3.2.4 h8d71039_2 conda-forge
xkeyboard-config 2.40 hd590300_0 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.1.1 hd590300_0 conda-forge
xorg-libsm 1.2.4 h7391055_0 conda-forge
xorg-libx11 1.8.7 h8ee46fc_0 conda-forge
xorg-libxau 1.0.11 hd590300_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h0b41bf4_2 conda-forge
xorg-libxrender 0.9.11 hd590300_0 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge
xorg-xf86vidmodeproto 2.3.1 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
y-py 0.5.9 py39h50f1755_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
ypy-websocket 0.8.2 pyhd8ed1ab_0 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zipp 3.15.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h166bdaf_4 conda-forge
zstd 1.5.5 hfc55251_0 conda-forge
Removing intermediate container 048b18990976
---> 1f021bc10eed
Step 40/50 : USER root
---> Running in 7d0dddb5a074
Removing intermediate container 7d0dddb5a074
---> ae70d7556e3d
Step 41/50 : COPY --chown=1000:1000 src/ ${REPO_DIR}/
---> 6c8ae52baeb3
Step 42/50 : LABEL repo2docker.ref="5dafaa797b46cef9f5e1a9c9917ffa4b805aaf45"
---> Running in ae0f6138dd06
Removing intermediate container ae0f6138dd06
---> f66410c73024
Step 43/50 : LABEL repo2docker.repo="https://github.com/arnimtest/PHYS2015_2023"
---> Running in 3eb286ad07b9
Removing intermediate container 3eb286ad07b9
---> 3712c755f848
Step 44/50 : LABEL repo2docker.version="2023.06.0+8.gd414e99"
---> Running in 25a98b53b65b
Removing intermediate container 25a98b53b65b
---> 49e99eb2fba0
Step 45/50 : USER ${NB_USER}
---> Running in b66c715b318e
Removing intermediate container b66c715b318e
---> 1dc2df110de2
Step 46/50 : ENV PYTHONUNBUFFERED=1
---> Running in 928a6b5f81d6
Removing intermediate container 928a6b5f81d6
---> 64c32148da05
Step 47/50 : COPY /python3-login /usr/local/bin/python3-login
---> ef4c775c227d
Step 48/50 : COPY /repo2docker-entrypoint /usr/local/bin/repo2docker-entrypoint
---> ae624ccc3b49
Step 49/50 : ENTRYPOINT ["/usr/local/bin/repo2docker-entrypoint"]
---> Running in c9d04f3b3eaa
Removing intermediate container c9d04f3b3eaa
---> c2a9fc52f0f7
Step 50/50 : CMD ["jupyter", "notebook", "--ip", "0.0.0.0"]
---> Running in 63ba1b66a4b9
Removing intermediate container 63ba1b66a4b9
---> 6f9b75493599
{"aux": {"ID": "sha256:6f9b75493599df61e4a620dd6453876345cf9d9f453838c2cf82b621fb2e7f37"}}Successfully built 6f9b75493599
Successfully tagged gesiscss/binder-r2d-g5b5b759-arnimtest-2dphys2015-5f2023-fd7fc4:5dafaa797b46cef9f5e1a9c9917ffa4b805aaf45
Error during build: UnixHTTPConnectionPool(host='localhost', port=None): Read timed out.
time curl https://notebooks.gesis.org/binder/health
{"ok": true, "checks": [{"service": "Docker registry", "ok": true}, {"service": "JupyterHub API", "ok": true}, {"service": "Pod quota", "total_pods": 62, "build_pods": 8, "user_pods": 54, "quota": 120, "ok": true, "_ignore_failure": true}]}curl https://notebooks.gesis.org/binder/health 0.04s user 0.02s system 0% cpu 1:03.32 totalResponse time > 1 min 🤔
[BinderHub][https://github.com/jupyterhub/binderhub) failed to build https://github.com/binder-examples/requirements.
Found built image, launching...
Launching server...
Server requested
2023-05-05T11:31:50.243399Z [Normal] Successfully assigned gesis/jupyter-binder-2dexamples-2drequirements-2d5soi2l28 to spko-css-app03
2023-05-05T11:31:50Z [Normal] Pulling image "jupyterhub/mybinder.org-tc-init:set-by-chartpress"
2023-05-05T11:31:51Z [Warning] Failed to pull image "jupyterhub/mybinder.org-tc-init:set-by-chartpress": rpc error: code = NotFound desc = failed to pull and unpack image "docker.io/jupyterhub/mybinder.org-tc-init:set-by-chartpress": failed to resolve reference "docker.io/jupyterhub/mybinder.org-tc-init:set-by-chartpress": docker.io/jupyterhub/mybinder.org-tc-init:set-by-chartpress: not found
2023-05-05T11:31:51Z [Warning] Error: ErrImagePull
2023-05-05T11:31:52Z [Normal] Back-off pulling image "jupyterhub/mybinder.org-tc-init:set-by-chartpress"
2023-05-05T11:31:52Z [Warning] Error: ImagePullBackOff
Spawn failed: Timeout
BinderHub launches container successfuly.
URL with https://github.com/binder-examples/requirementslaunchURL with launchresulted in no issue.
repo2docker failed to build https://github.com/sgibson91/mybinder.org-user-survey-nlp/.
Log displayed to user
Step 51/52 : ENTRYPOINT ["/usr/local/bin/repo2docker-entrypoint"]
---> Running in 4a8e9b6b773e
Removing intermediate container 4a8e9b6b773e
---> f40a9f03be04
Step 52/52 : CMD ["jupyter", "notebook", "--ip", "0.0.0.0"]
---> Running in 902a10895a6b
Removing intermediate container 902a10895a6b
---> 0d984310ca34
{"aux": {"ID": "sha256:0d984310ca34dd377f145d640e58afc062671bf3d66fbf8fb4fb306e1aa0db10"}}Successfully built 0d984310ca34
Successfully tagged gesiscss/binder-r2d-g5b5b759-sgibson91-2dmybinder-2eorg-2duser-2dsurvey-2dnlp-cbf4b8:1ac84874f0885fdc812cca2cbd6dc4e4aefdbc75
Pushing image
Error during build: UnixHTTPConnectionPool(host='localhost', port=None): Read timed out.
Log at Kubernetes pod
[I 230620 21:30:01 build:479] Started build build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:30:01 build:481] Watching build pod build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:30:03 build:563] Watching logs of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:32:45 build:595] Finished streaming logs of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[W 230620 21:32:46 builder:161] Stream closed while handling /binder/build/gh/sgibson91/mybinder.org-user-survey-nlp/main?build_token=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJleHAiOjE2ODcyOTY4OTksImF1ZCI6ImdoL3NnaWJzb245MS9teWJpb
mRlci5vcmctdXNlci1zdXJ2ZXktbmxwL21haW4iLCJvcmlnaW4iOiJteWJpbmRlci5vcmcifQ.J0hcMZnVv1O3qJnEUD5JLV6oui2eUpjM8lhOQfId8IY
[I 230620 21:32:46 log:135] 200 GET /binder/build/gh/sgibson91/mybinder.org-user-survey-nlp/main?build_token=[secret] ([email protected]) 166362.69ms
[I 230620 21:46:49 repoproviders:916] Using cached ref for https://api.github.com/repos/sgibson91/mybinder.org-user-survey-nlp/commits/main: 1ac84874f0885fdc812cca2cbd6dc4e4aefdbc75
[I 230620 21:46:51 build:474] Build build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32 already running
[I 230620 21:46:51 build:481] Watching build pod build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:46:51 build:563] Watching logs of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[W 230620 21:46:57 builder:161] Stream closed while handling /binder/build/gh/sgibson91/mybinder.org-user-survey-nlp/main?build_token=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJleHAiOjE2ODcyOTc5MDksImF1ZCI6ImdoL3NnaWJzb245MS9teWJpb
mRlci5vcmctdXNlci1zdXJ2ZXktbmxwL21haW4iLCJvcmlnaW4iOiJteWJpbmRlci5vcmcifQ.tGCPwTfeuIkD_-toqQiChHrz2LwQ1RPH6SGP4S48XkA
[I 230620 21:46:57 log:135] 200 GET /binder/build/gh/sgibson91/mybinder.org-user-survey-nlp/main?build_token=[secret] ([email protected]) 8189.26ms
[I 230620 21:47:02 build:573] Stopping logs of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:47:21 build:556] Stopping watch of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:51:07 repoproviders:916] Using cached ref for https://api.github.com/repos/sgibson91/mybinder.org-user-survey-nlp/commits/main: 1ac84874f0885fdc812cca2cbd6dc4e4aefdbc75
[I 230620 21:51:09 build:474] Build build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32 already running
[I 230620 21:51:09 build:481] Watching build pod build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 21:51:09 build:563] Watching logs of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 22:01:55 build:595] Finished streaming logs of build-sgibson91-2dmybinder-2eorg-2duser-2dsurvey--cbf4b8-1ac-32
[I 230620 22:01:56 builder:617] Launching server for https://github.com/sgibson91/mybinder.org-user-survey-nlp: 0 other servers running this repo (191 total)
[I 230620 22:01:56 launcher:197] Creating user sgibson91-mybin-user-survey-nlp-rhaku0a5 for image gesiscss/binder-r2d-g5b5b759-sgibson91-2dmybinder-2eorg-2duser-2dsurvey-2dnlp-cbf4b8:1ac84874f0885fdc812cca2cbd6dc4e4aefdbc75
[I 230620 22:01:56 launcher:257] Starting server for user sgibson91-mybin-user-survey-nlp-rhaku0a5 with image gesiscss/binder-r2d-g5b5b759-sgibson91-2dmybinder-2eorg-2duser-2dsurvey-2dnlp-cbf4b8:1ac84874f0885fdc812cca2cbd6dc4e4a
efdbc75
[I 230620 22:05:13 builder:722] Launched https://github.com/sgibson91/mybinder.org-user-survey-nlp in 196s
[I 230620 22:06:13 log:135] 200 GET /binder/build/gh/sgibson91/mybinder.org-user-survey-nlp/main?build_token=[secret] ([email protected]) 905439.79ms
repo2docker builds container successfuly.
URL with https://github.com/sgibson91/mybinder.org-user-survey-nlp/launchURL with https://github.com/sgibson91/mybinder.org-user-survey-nlp/launchresulted in no issue.
I have a repository where the last build was Jan 17th
https://github.com/gesiscss/btw17_sample_scripts/
The repository has been tested & running then. There haven't been any further commits since then. However, when I try to launch the repository now rebuilds 👇
Have we purged any images recently from https://hub.docker.com/u/gesiscss/ ?
During stress test!
Waiting for build to start...
---> Using cache
---> 0789f5d70008
Step 15/53 : ENV NB_PYTHON_PREFIX=${CONDA_DIR}/envs/notebook
---> Using cache
---> 89e05983b3d4
Step 16/53 : ENV NPM_DIR=${APP_BASE}/npm
---> Using cache
---> d9ab9faeede3
Step 17/53 : ENV NPM_CONFIG_GLOBALCONFIG=${NPM_DIR}/npmrc
---> Using cache
---> 5333033100a9
Step 18/53 : ENV NB_ENVIRONMENT_FILE=/tmp/env/environment.lock
---> Using cache
---> 87b6194588b4
Step 19/53 : ENV MAMBA_ROOT_PREFIX=${CONDA_DIR}
---> Using cache
---> ccc3cc01fd42
Step 20/53 : ENV MAMBA_EXE=${CONDA_DIR}/bin/mamba
---> Using cache
---> a99a3e8425e5
Step 21/53 : ENV CONDA_PLATFORM=linux-64
---> Using cache
---> 3801a3a9ba44
Step 22/53 : ENV KERNEL_PYTHON_PREFIX=${CONDA_DIR}/envs/kernel
---> Using cache
---> 5fb413100ecb
Step 23/53 : ENV KERNEL_ENVIRONMENT_FILE=/tmp/env/kernel-environment.lock
---> Using cache
---> e7cfc913322b
Step 24/53 : ENV PATH=${NB_PYTHON_PREFIX}/bin:${KERNEL_PYTHON_PREFIX}/bin:${CONDA_DIR}/bin:${NPM_DIR}/bin:${PATH}
---> Using cache
---> a412b04461ca
Step 25/53 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2factivate-2dconda-2esh-44e764 /etc/profile.d/activate-conda.sh
---> Using cache
---> 7d846b2f469a
Step 26/53 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2fenvironment-2epy-2d3-2e10-2dlinux-2d64-2elock-388e0b /tmp/env/environment.lock
---> Using cache
---> 30477d7f36a0
Step 27/53 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2fenvironment-2epy-2d3-2e6-2dlinux-2d64-2elock-9604d2 /tmp/env/kernel-environment.lock
---> Using cache
---> d287d0d5e9c0
Step 28/53 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2finstall-2dbase-2denv-2ebash-e5509f /tmp/install-base-env.bash
---> Using cache
---> e04c3ac805c7
Step 29/53 : RUN TIMEFORMAT='time: %3R' bash -c 'time /tmp/install-base-env.bash' && rm -rf /tmp/install-base-env.bash /tmp/env
---> Using cache
---> 96be281c6fe6
Step 30/53 : RUN mkdir -p ${NPM_DIR} && chown -R ${NB_USER}:${NB_USER} ${NPM_DIR}
---> Using cache
---> eafaed1e0254
Step 31/53 : USER root
---> Using cache
---> a3a9d9f0d5fb
Step 32/53 : ARG REPO_DIR=${HOME}
---> Using cache
---> d309f78db8de
Step 33/53 : ENV REPO_DIR=${REPO_DIR}
---> Using cache
---> da0e616ac32e
Step 34/53 : RUN if [ ! -d "${REPO_DIR}" ]; then /usr/bin/install -o ${NB_USER} -g ${NB_USER} -d "${REPO_DIR}"; fi
---> Using cache
---> 8bcd7eb78689
Step 35/53 : WORKDIR ${REPO_DIR}
---> Using cache
---> 227ba50a92d0
Step 36/53 : RUN chown ${NB_USER}:${NB_USER} ${REPO_DIR}
---> Using cache
---> 592162b68e48
Step 37/53 : ENV PATH=${HOME}/.local/bin:${REPO_DIR}/.local/bin:${PATH}
---> Using cache
---> 9fa90f2a57a0
Step 38/53 : ENV CONDA_DEFAULT_ENV=${KERNEL_PYTHON_PREFIX}
---> Using cache
---> 302fde57f83d
Step 39/53 : COPY --chown=1000:1000 src/binder/environment.yml ${REPO_DIR}/binder/environment.yml
---> 47404095ed70
Step 40/53 : RUN apt-get -qq update && apt-get install --yes --no-install-recommends texlive && apt-get -qq purge && apt-get -qq clean && rm -rf /var/lib/apt/lists/*
---> Running in c56c53ca6db9
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
fonts-lmodern libavahi-client3 libavahi-common-data libavahi-common3
libcups2 libcupsimage2 libdbus-1-3 libgs9 libgs9-common libidn11 libijs-0.35
libjbig2dec0 libkpathsea6 libnspr4 libnss3 libpaper-utils libpaper1
libpoppler73 libpotrace0 libptexenc1 libsynctex1 libtexlua52 libtexluajit2
libxaw7 libxi6 libxmu6 libxpm4 libzzip-0-13 poppler-data t1utils tex-common
texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base
texlive-latex-recommended xdg-utils
Suggested packages:
cups-common poppler-utils ghostscript fonts-japanese-mincho
| fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic
fonts-arphic-ukai fonts-arphic-uming fonts-nanum debhelper gv
| postscript-viewer perl-tk xpdf-reader | pdf-viewer
texlive-fonts-recommended-doc texlive-latex-base-doc
texlive-latex-recommended-doc texlive-pstricks
Recommended packages:
libcupsfilters1 dbus fonts-droid-fallback lmodern tex-gyre tipa
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
fonts-lmodern libavahi-client3 libavahi-common-data libavahi-common3
libcups2 libcupsimage2 libdbus-1-3 libgs9 libgs9-common libidn11 libijs-0.35
libjbig2dec0 libkpathsea6 libnspr4 libnss3 libpaper-utils libpaper1
libpoppler73 libpotrace0 libptexenc1 libsynctex1 libtexlua52 libtexluajit2
libxaw7 libxi6 libxmu6 libxpm4 libzzip-0-13 poppler-data t1utils tex-common
texlive texlive-base texlive-binaries texlive-fonts-recommended
texlive-latex-base texlive-latex-recommended xdg-utils
0 upgraded, 38 newly installed, 0 to remove and 1 not upgraded.
Need to get 65.0 MB of archives.
After this operation, 209 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu bionic/main amd64 poppler-data all 0.4.8-2 [1,479 kB]
Get:2 http://archive.ubuntu.com/ubuntu bionic/main amd64 tex-common all 6.09 [33.0 kB]
Get:3 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libdbus-1-3 amd64 1.12.2-1ubuntu1.4 [175 kB]
Get:4 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libidn11 amd64 1.33-2.1ubuntu1.2 [46.6 kB]
Get:5 http://archive.ubuntu.com/ubuntu bionic/main amd64 fonts-lmodern all 2.004.5-3 [4,551 kB]
Get:6 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libavahi-common-data amd64 0.7-3.1ubuntu1.3 [22.2 kB]
Get:7 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libavahi-common3 amd64 0.7-3.1ubuntu1.3 [21.6 kB]
Get:8 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libavahi-client3 amd64 0.7-3.1ubuntu1.3 [25.2 kB]
Get:9 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libcups2 amd64 2.2.7-1ubuntu2.10 [211 kB]
Get:10 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libcupsimage2 amd64 2.2.7-1ubuntu2.10 [18.6 kB]
Get:11 http://archive.ubuntu.com/ubuntu bionic/main amd64 libijs-0.35 amd64 0.35-13 [15.5 kB]
Get:12 http://archive.ubuntu.com/ubuntu bionic/main amd64 libjbig2dec0 amd64 0.13-6 [55.9 kB]
Get:13 http://archive.ubuntu.com/ubuntu bionic/main amd64 libpaper1 amd64 1.1.24+nmu5ubuntu1 [13.6 kB]
Get:14 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libgs9-common all 9.26~dfsg+0-0ubuntu0.18.04.18 [5,092 kB]
Get:15 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libgs9 amd64 9.26~dfsg+0-0ubuntu0.18.04.18 [2,264 kB]
Get:16 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libkpathsea6 amd64 2017.20170613.44572-8ubuntu0.2 [55.0 kB]
Get:17 http://archive.ubuntu.com/ubuntu bionic/main amd64 libnspr4 amd64 2:4.18-1ubuntu1 [112 kB]
Get:18 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libnss3 amd64 2:3.35-2ubuntu2.16 [1,220 kB]
Get:19 http://archive.ubuntu.com/ubuntu bionic/main amd64 libpaper-utils amd64 1.1.24+nmu5ubuntu1 [8,170 B]
Get:20 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libpoppler73 amd64 0.62.0-2ubuntu2.14 [800 kB]
Get:21 http://archive.ubuntu.com/ubuntu bionic/main amd64 libpotrace0 amd64 1.14-2 [17.4 kB]
Get:22 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libptexenc1 amd64 2017.20170613.44572-8ubuntu0.2 [34.5 kB]
Get:23 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libsynctex1 amd64 2017.20170613.44572-8ubuntu0.2 [41.4 kB]
Get:24 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libtexlua52 amd64 2017.20170613.44572-8ubuntu0.2 [91.1 kB]
Get:25 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libtexluajit2 amd64 2017.20170613.44572-8ubuntu0.2 [231 kB]
Get:26 http://archive.ubuntu.com/ubuntu bionic/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB]
Get:27 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libxpm4 amd64 1:3.5.12-1ubuntu0.18.04.2 [34.8 kB]
Get:28 http://archive.ubuntu.com/ubuntu bionic/main amd64 libxaw7 amd64 2:1.0.13-1 [173 kB]
Get:29 http://archive.ubuntu.com/ubuntu bionic/main amd64 libxi6 amd64 2:1.7.9-1 [29.2 kB]
Get:30 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libzzip-0-13 amd64 0.13.62-3.1ubuntu0.18.04.1 [26.0 kB]
Get:31 http://archive.ubuntu.com/ubuntu bionic/main amd64 t1utils amd64 1.41-2 [56.0 kB]
Get:32 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 texlive-binaries amd64 2017.20170613.44572-8ubuntu0.2 [8,165 kB]
Get:33 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 xdg-utils all 1.1.2-1ubuntu2.5 [60.4 kB]
Get:34 http://archive.ubuntu.com/ubuntu bionic/main amd64 texlive-base all 2017.20180305-1 [18.7 MB]
Get:35 http://archive.ubuntu.com/ubuntu bionic/universe amd64 texlive-fonts-recommended all 2017.20180305-1 [5,262 kB]
Get:36 http://archive.ubuntu.com/ubuntu bionic/main amd64 texlive-latex-base all 2017.20180305-1 [951 kB]
Get:37 http://archive.ubuntu.com/ubuntu bionic/main amd64 texlive-latex-recommended all 2017.20180305-1 [14.9 MB]
Get:38 http://archive.ubuntu.com/ubuntu bionic/universe amd64 texlive all 2017.20180305-1 [14.4 kB]
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Setting up libgs9-common (9.26~dfsg+0-0ubuntu0.18.04.18) ...
Setting up libxi6:amd64 (2:1.7.9-1) ...
Setting up libkpathsea6:amd64 (2017.20170613.44572-8ubuntu0.2) ...
Setting up libpaper1:amd64 (1.1.24+nmu5ubuntu1) ...
Creating config file /etc/papersize with new version
Setting up libtexlua52:amd64 (2017.20170613.44572-8ubuntu0.2) ...
Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ...
Setting up libsynctex1:amd64 (2017.20170613.44572-8ubuntu0.2) ...
Setting up libptexenc1:amd64 (2017.20170613.44572-8ubuntu0.2) ...
Setting up tex-common (6.09) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up poppler-data (0.4.8-2) ...
Setting up libnspr4:amd64 (2:4.18-1ubuntu1) ...
Setting up libxmu6:amd64 (2:1.1.2-2) ...
Setting up libjbig2dec0:amd64 (0.13-6) ...
Setting up t1utils (1.41-2) ...
Setting up libijs-0.35:amd64 (0.35-13) ...
Setting up libxpm4:amd64 (1:3.5.12-1ubuntu0.18.04.2) ...
Setting up libpotrace0 (1.14-2) ...
Setting up libzzip-0-13:amd64 (0.13.62-3.1ubuntu0.18.04.1) ...
Setting up xdg-utils (1.1.2-1ubuntu2.5) ...
Setting up libtexluajit2:amd64 (2017.20170613.44572-8ubuntu0.2) ...
Setting up libidn11:amd64 (1.33-2.1ubuntu1.2) ...
Setting up libdbus-1-3:amd64 (1.12.2-1ubuntu1.4) ...
Setting up fonts-lmodern (2.004.5-3) ...
Setting up libavahi-common-data:amd64 (0.7-3.1ubuntu1.3) ...
Setting up libxaw7:amd64 (2:1.0.13-1) ...
Setting up libnss3:amd64 (2:3.35-2ubuntu2.16) ...
Setting up libpoppler73:amd64 (0.62.0-2ubuntu2.14) ...
Setting up libavahi-common3:amd64 (0.7-3.1ubuntu1.3) ...
Setting up libavahi-client3:amd64 (0.7-3.1ubuntu1.3) ...
Setting up libcups2:amd64 (2.2.7-1ubuntu2.10) ...
Setting up libcupsimage2:amd64 (2.2.7-1ubuntu2.10) ...
Setting up libgs9:amd64 (9.26~dfsg+0-0ubuntu0.18.04.18) ...
Setting up texlive-binaries (2017.20170613.44572-8ubuntu0.2) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
update-alternatives: warning: skip creation of /usr/share/man/man1/bibtex.1.gz because associated file /usr/share/man/man1/bibtex.original.1.gz (of link group bibtex) doesn't exist
Setting up texlive-base (2017.20180305-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
tl-paper: setting paper size for dvipdfmx to letter: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for dvips to letter: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for pdftex to letter: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
tl-paper: setting paper size for xdvi to letter: /var/lib/texmf/xdvi/XDvi-paper
Setting up texlive-fonts-recommended (2017.20180305-1) ...
Setting up texlive-latex-base (2017.20180305-1) ...
Setting up texlive-latex-recommended (2017.20180305-1) ...
Setting up texlive (2017.20180305-1) ...
Processing triggers for mime-support (3.60ubuntu1) ...
Processing triggers for libc-bin (2.27-3ubuntu1.6) ...
Processing triggers for fontconfig (2.12.6-0ubuntu2) ...
Processing triggers for tex-common (6.09) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
Removing intermediate container c56c53ca6db9
---> 0fc52858c89d
Step 41/53 : USER ${NB_USER}
---> Running in 336025f97585
Removing intermediate container 336025f97585
---> 6c9b08f7f53b
Step 42/53 : RUN TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${KERNEL_PYTHON_PREFIX} --file "binder/environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${KERNEL_PYTHON_PREFIX} '
---> Running in 6bc038202416
Looking for: ['python=3.6', 'cython', 'ipython', 'ipyparallel', 'ipywidgets', 'numpy', 'matplotlib', 'mpi4py', 'networkx', 'pandas', 'scikit-image', 'scikit-learn', 'sympy']
Transaction
Prefix: /srv/conda/envs/kernel
Updating specs:
- cython
- ipyparallel
- numpy
- matplotlib
- mpi4py
- networkx
- pandas
- scikit-image
- scikit-learn
- sympy
- python=3.6
- ipython
- ipywidgets
Package Version Build Channel Size
──────────────────────────────────────────────────────────────────────────────────────
Install:
──────────────────────────────────────────────────────────────────────────────────────
+ cython 0.29.24 py36hc4f0c31_0 conda-forge 2MB
+ libgfortran5 13.2.0 ha4646dd_0 conda-forge 1MB
+ kiwisolver 1.3.1 py36h605e78d_1 conda-forge 80kB
+ pyqt5-sip 4.19.18 py36hc4f0c31_7 conda-forge 317kB
+ gmp 6.2.1 h58526e2_0 conda-forge 826kB
+ yaml 0.2.5 h7f98852_2 conda-forge 89kB
+ libpq 14.2 hd57d9b9_0 conda-forge 3MB
+ jpeg 9e h166bdaf_1 conda-forge 274kB
+ libdeflate 1.10 h7f98852_0 conda-forge 79kB
+ mpi 1.0 openmpi conda-forge 4kB
+ libiconv 1.17 h166bdaf_0 conda-forge 1MB
+ jbig 2.1 h7f98852_2003 conda-forge 44kB
+ lerc 3.0 h9c3ff4c_0 conda-forge 222kB
+ libwebp-base 1.2.2 h7f98852_1 conda-forge 844kB
+ libllvm13 13.0.1 hf817b99_2 conda-forge 35MB
+ expat 2.4.8 h27087fc_0 conda-forge 192kB
+ lz4-c 1.9.3 h9c3ff4c_1 conda-forge 184kB
+ alsa-lib 1.2.6.1 h7f98852_0 conda-forge 592kB
+ libevent 2.1.10 h9b69904_4 conda-forge 1MB
+ mysql-common 8.0.29 haf5c9bc_0 conda-forge 2MB
+ nspr 4.32 h9c3ff4c_1 conda-forge 239kB
+ gettext 0.19.8.1 h73d1719_1008 conda-forge 4MB
+ pcre 8.45 h9c3ff4c_0 conda-forge 259kB
+ libopus 1.3.1 h7f98852_1 conda-forge 261kB
+ libpng 1.6.37 h21135ba_2 conda-forge 314kB
+ pthread-stubs 0.4 h36c2ea0_1001 conda-forge 6kB
+ xorg-libxau 1.0.9 h7f98852_0 conda-forge 13kB
+ xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge 19kB
+ libuuid 2.32.1 h7f98852_1000 conda-forge 28kB
+ cudatoolkit 11.7.0 hd8887f6_10 conda-forge 872MB
+ libogg 1.3.4 h7f98852_1 conda-forge 211kB
+ libgfortran-ng 13.2.0 h69a702a_0 conda-forge 23kB
+ mpfr 4.1.0 h9202a9a_1 conda-forge 3MB
+ pyyaml 5.4.1 py36h8f6f2f9_1 conda-forge 198kB
+ libxml2 2.9.12 h885dcf4_1 conda-forge 778kB
+ libclang 13.0.1 default_hc23dcda_0 conda-forge 12MB
+ zstd 1.5.2 h8a70e8d_1 conda-forge 462kB
+ nss 3.77 h2350873_0 conda-forge 2MB
+ libglib 2.70.2 h174f98d_4 conda-forge 3MB
+ freetype 2.10.4 h0708190_1 conda-forge 911kB
+ libxcb 1.13 h7f98852_1004 conda-forge 400kB
+ ucx 1.12.1 h7a399c7_1 conda-forge 20MB
+ libvorbis 1.3.7 h9c3ff4c_0 conda-forge 286kB
+ mpc 1.2.1 h9f54685_0 conda-forge 109kB
+ libxkbcommon 1.0.3 he3ba5ed_0 conda-forge 595kB
+ mysql-libs 8.0.29 h28c427c_0 conda-forge 2MB
+ libtiff 4.3.0 h542a066_3 conda-forge 653kB
+ gstreamer 1.20.2 hd4edc92_1 conda-forge 2MB
+ dbus 1.13.6 h5008d03_3 conda-forge 619kB
+ fontconfig 2.14.0 h8e229c2_0 conda-forge 312kB
+ openmpi 4.1.3 h846660c_103 conda-forge 4MB
+ gmpy2 2.1.0b5 py36h3f4d9dc_0 conda-forge 212kB
+ openjpeg 2.5.0 h7d73246_0 conda-forge 527kB
+ lcms2 2.12 hddcbb42_0 conda-forge 453kB
+ gst-plugins-base 1.20.2 hf6a322e_1 conda-forge 3MB
+ mpi4py 3.1.1 py36he1a1962_0 conda-forge 652kB
+ mpmath 1.3.0 pyhd8ed1ab_0 conda-forge 438kB
+ joblib 1.2.0 pyhd8ed1ab_0 conda-forge 210kB
+ threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge 18kB
+ cloudpickle 2.2.1 pyhd8ed1ab_0 conda-forge 28kB
+ cycler 0.11.0 pyhd8ed1ab_0 conda-forge 10kB
+ toolz 0.12.0 pyhd8ed1ab_0 conda-forge 49kB
+ colorama 0.4.5 pyhd8ed1ab_0 conda-forge 19kB
+ olefile 0.46 pyh9f0ad1d_1 conda-forge 33kB
+ font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge 397kB
+ font-ttf-inconsolata 3.000 h77eed37_0 conda-forge 97kB
+ font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge 701kB
+ font-ttf-ubuntu 0.83 hab24e00_0 conda-forge 2MB
+ dask-core 2021.3.0 pyhd8ed1ab_0 conda-forge 719kB
+ tqdm 4.65.0 pyhd8ed1ab_0 conda-forge 88kB
+ fonts-conda-forge 1 0 conda-forge 4kB
+ ipyparallel 8.6.1 pyhd8ed1ab_0 conda-forge 208kB
+ fonts-conda-ecosystem 1 0 conda-forge 4kB
+ libopenblas 0.3.21 h043d6bf_0 pkgs/main 6MB
+ sympy 1.8 py36h5fab9bb_0 conda-forge 12MB
+ cytoolz 0.11.0 py36h8f6f2f9_3 conda-forge 403kB
+ pillow 8.3.2 py36h676a545_0 conda-forge 719kB
+ qt 5.12.9 h1304e3e_6 conda-forge 103MB
+ libblas 3.9.0 16_linux64_openblas conda-forge 13kB
+ pyqt-impl 5.12.3 py36h7ec31b9_7 conda-forge 6MB
+ libcblas 3.9.0 16_linux64_openblas conda-forge 13kB
+ liblapack 3.9.0 16_linux64_openblas conda-forge 13kB
+ pyqtwebengine 5.12.1 py36h7ec31b9_7 conda-forge 179kB
+ pyqtchart 5.12 py36h7ec31b9_7 conda-forge 263kB
+ numpy 1.19.5 py36hfc0c790_2 conda-forge 6MB
+ pyqt 5.12.3 py36h5fab9bb_7 conda-forge 22kB
+ imagecodecs-lite 2019.12.3 py36h92226af_3 conda-forge 211kB
+ pywavelets 1.1.1 py36he33b4a0_3 conda-forge 5MB
+ scipy 1.5.3 py36h81d768a_1 conda-forge 20MB
+ matplotlib-base 3.3.4 py36hd391965_0 conda-forge 7MB
+ pandas 1.1.5 py36h284efc9_0 conda-forge 12MB
+ scikit-learn 0.24.2 py36hc89565f_1 conda-forge 8MB
+ matplotlib 3.3.4 py36h5fab9bb_0 conda-forge 6kB
+ imageio 2.31.5 pyh8c1a49c_0 conda-forge 291kB
+ tifffile 2020.6.3 py_0 conda-forge 111kB
+ networkx 2.7 pyhd8ed1ab_0 conda-forge 2MB
+ scikit-image 0.17.2 py36h284efc9_4 conda-forge 12MB
Upgrade:
──────────────────────────────────────────────────────────────────────────────────────
- nodejs 14.18.3 h96d913c_3 conda-forge
+ nodejs 17.8.0 h784f1fd_0 conda-forge 16MB
- widgetsnbextension 3.5.1 py36h5fab9bb_4 conda-forge
+ widgetsnbextension 3.6.1 pyha770c72_0 conda-forge 1MB
- ipywidgets 7.6.5 pyhd8ed1ab_0 conda-forge
+ ipywidgets 7.7.4 pyhd8ed1ab_0 conda-forge 104kB
Downgrade:
──────────────────────────────────────────────────────────────────────────────────────
- icu 70.1 h27087fc_0 conda-forge
+ icu 69.1 h9c3ff4c_0 conda-forge 14MB
Summary:
Install: 97 packages
Upgrade: 3 packages
Downgrade: 1 packages
Total download: 1GB
──────────────────────────────────────────────────────────────────────────────────────
�[91mbash: line 1: 8 Killed ${MAMBA_EXE} env update -p ${KERNEL_PYTHON_PREFIX} --file "binder/environment.yml"
time: 509.306
�[0mRemoving intermediate container 6bc038202416
The command '/bin/sh -c TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${KERNEL_PYTHON_PREFIX} --file "binder/environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${KERNEL_PYTHON_PREFIX} '' returned a non-zero code: 137
When filling in repository information on https://notebooks.gesis.org/binder/, the form automatically creates a copyable URL ("Copy the URL below and share your Binder with others"). However, that URL points to mybinder.org. Instead, as per the FAQ, it should use https://notebooks.gesis.org/binder/ as the prefix.
Users would expect this URL to also point to GESIS notebooks. So this should be updated to reflect the correct URL.
repo2docker failed to build .
stops building with
Waiting for build to start...
Picked Git content provider.
Cloning into '/tmp/repo2dockernv1pyp2i'...
Updating files: 100% (130/130), done.
HEAD is now at 483f369 Update binder url
Building conda environment for python=3.9
Using CondaBuildPack builder
Step 1/50 : FROM buildpack-deps:bionic
---> aeecfa359fe2
Step 2/50 : ENV DEBIAN_FRONTEND=noninteractive
---> Using cache
---> 24d5a784a485
Step 3/50 : RUN apt-get -qq update && apt-get -qq install --yes --no-install-recommends locales > /dev/null && apt-get -qq purge && apt-get -qq clean && rm -rf /var/lib/apt/lists/*
---> Using cache
---> 9d3554e4a7c1
Step 4/50 : RUN echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && locale-gen
---> Using cache
---> 6a601a4c39ee
Step 5/50 : ENV LC_ALL=en_US.UTF-8 LANG=en_US.UTF-8 LANGUAGE=en_US.UTF-8
---> Using cache
---> fb180bd88c73
Step 6/50 : ENV SHELL=/bin/bash
---> Using cache
---> c5384dd35223
Step 7/50 : ARG NB_USER
---> Using cache
---> e9010cc0f85a
Step 8/50 : ARG NB_UID
---> Using cache
---> c0eca1c9e4f9
Step 9/50 : ENV USER=${NB_USER} HOME=/home/${NB_USER}
---> Using cache
---> 60d1896a7d04
Step 10/50 : RUN groupadd --gid ${NB_UID} ${NB_USER} && useradd --comment "Default user" --create-home --gid ${NB_UID} --no-log-init --shell /bin/bash --uid ${NB_UID} ${NB_USER}
---> Using cache
---> 9af0a83d0b90
Step 11/50 : RUN apt-get -qq update && apt-get -qq install --yes --no-install-recommends less unzip > /dev/null && apt-get -qq purge && apt-get -qq clean && rm -rf /var/lib/apt/lists/*
---> Using cache
---> b77ce1367b3b
Step 12/50 : EXPOSE 8888
---> Using cache
---> 2deb5c061745
Step 13/50 : ENV APP_BASE=/srv
---> Using cache
---> 2bba371aaabc
Step 14/50 : ENV CONDA_DIR=${APP_BASE}/conda
---> Using cache
---> 9c94c5401c96
Step 15/50 : ENV NB_PYTHON_PREFIX=${CONDA_DIR}/envs/notebook
---> Using cache
---> 9bba3b5e3aa4
Step 16/50 : ENV NPM_DIR=${APP_BASE}/npm
---> Using cache
---> 92c112e89785
Step 17/50 : ENV NPM_CONFIG_GLOBALCONFIG=${NPM_DIR}/npmrc
---> Using cache
---> 31f013e7f40d
Step 18/50 : ENV NB_ENVIRONMENT_FILE=/tmp/env/environment.lock
---> Using cache
---> 39c6de5efd0d
Step 19/50 : ENV MAMBA_ROOT_PREFIX=${CONDA_DIR}
---> Using cache
---> 7c16b2fd9374
Step 20/50 : ENV MAMBA_EXE=${CONDA_DIR}/bin/mamba
---> Using cache
---> c01242c2e57d
Step 21/50 : ENV CONDA_PLATFORM=linux-64
---> Using cache
---> e08ab9ecdf63
Step 22/50 : ENV KERNEL_PYTHON_PREFIX=${NB_PYTHON_PREFIX}
---> Using cache
---> 6e36d241a1f0
Step 23/50 : ENV PATH=${NB_PYTHON_PREFIX}/bin:${CONDA_DIR}/bin:${NPM_DIR}/bin:${PATH}
---> Using cache
---> d8b86258d539
Step 24/50 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2factivate-2dconda-2esh-44e764 /etc/profile.d/activate-conda.sh
---> Using cache
---> 0602fd7ec4e4
Step 25/50 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2fenvironment-2epy-2d3-2e9-2dlinux-2d64-2elock-3652dd /tmp/env/environment.lock
---> Using cache
---> 20462bf2fa90
Step 26/50 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2finstall-2dbase-2denv-2ebash-e5509f /tmp/install-base-env.bash
---> Using cache
---> 788b7ec92499
Step 27/50 : RUN TIMEFORMAT='time: %3R' bash -c 'time /tmp/install-base-env.bash' && rm -rf /tmp/install-base-env.bash /tmp/env
---> Using cache
---> 4bd91576a89a
Step 28/50 : RUN mkdir -p ${NPM_DIR} && chown -R ${NB_USER}:${NB_USER} ${NPM_DIR}
---> Using cache
---> ae103b857fa3
Step 29/50 : USER root
---> Using cache
---> d6479f3b314f
Step 30/50 : ARG REPO_DIR=${HOME}
---> Using cache
---> deeb7dca9e0e
Step 31/50 : ENV REPO_DIR=${REPO_DIR}
---> Using cache
---> 68cb62dca68a
Step 32/50 : RUN if [ ! -d "${REPO_DIR}" ]; then /usr/bin/install -o ${NB_USER} -g ${NB_USER} -d "${REPO_DIR}"; fi
---> Using cache
---> 0bd27911c5d8
Step 33/50 : WORKDIR ${REPO_DIR}
---> Using cache
---> ba6df163c4cf
Step 34/50 : RUN chown ${NB_USER}:${NB_USER} ${REPO_DIR}
---> Using cache
---> fc27ae85828d
Step 35/50 : ENV PATH=${HOME}/.local/bin:${REPO_DIR}/.local/bin:${PATH}
---> Using cache
---> 763ebc27aa72
Step 36/50 : ENV CONDA_DEFAULT_ENV=${KERNEL_PYTHON_PREFIX}
---> Using cache
---> bdde68f97bbf
Step 37/50 : COPY --chown=1000:1000 src/binder/environment.yml ${REPO_DIR}/binder/environment.yml
---> Using cache
---> 132ef4e7ee7c
Step 38/50 : USER ${NB_USER}
---> Using cache
---> 9b1c51f304bc
Step 39/50 : RUN TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "binder/environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '
---> Running in 061771c3a46e
Looking for: ['beautifulsoup4=4.11.1', 'feedparser=6.0.8', 'gensim=4.1.2', 'ipywidgets=7.6.5', 'matplotlib=3.5.2', 'networkx=2.8.4', 'numpy=1.21.5', 'openpyxl=3.0.10', 'pandas=1.4.4', 'pip=22.2.2', 'pygraphviz=1.9', 'python=3.9.13', 'requests=2.28.1', 'scikit-learn=1.0.2', 'scipy=1.9.1', 'seaborn=0.11.2', 'selenium=3.141.0', 'spacy=3.3.1', 'sqlalchemy=1.4.39', 'statsmodels=0.13.2', 'textacy=0.11.0', 'xlsxwriter=3.0.3']
Transaction
Prefix: /srv/conda/envs/notebook
Updating specs:
Package Version Build Channel Size
─────────────────────────────────────────────────────────────────────────────────────────────────
Install:
─────────────────────────────────────────────────────────────────────────────────────────────────
Change:
─────────────────────────────────────────────────────────────────────────────────────────────────
Downgrade:
─────────────────────────────────────────────────────────────────────────────────────────────────
Summary:
Install: 136 packages
Change: 2 packages
Downgrade: 13 packages
Total download: 385MB
─────────────────────────────────────────────────────────────────────────────────────────────────
Downloading and Extracting Packages
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working...
Installed package of scikit-learn can be accelerated using scikit-learn-intelex.
More details are available here: https://intel.github.io/scikit-learn-intelex
For example:
$ conda install scikit-learn-intelex
$ python -m sklearnex my_application.py
done
Installing pip dependencies: ...working... Ran pip subprocess with arguments:
['/srv/conda/envs/notebook/bin/python', '-m', 'pip', 'install', '-U', '-r', '/home/jovyan/binder/condaenv.zviij9q3.requirements.txt', '--exists-action=b']
Pip subprocess output:
Collecting emoji==2.2.0
Downloading emoji-2.2.0.tar.gz (240 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 240.9/240.9 kB 6.7 MB/s eta 0:00:00
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Collecting factor-analyzer==0.4.1
Downloading factor_analyzer-0.4.1.tar.gz (41 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 41.8/41.8 kB 9.4 MB/s eta 0:00:00
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Collecting mwparserfromhell==0.6.4
Downloading mwparserfromhell-0.6.4-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (178 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 178.7/178.7 kB 25.4 MB/s eta 0:00:00
Collecting powerlaw==1.5
Downloading powerlaw-1.5-py3-none-any.whl (24 kB)
Collecting pywikibot==8.0.2
Downloading pywikibot-8.0.2-py3-none-any.whl (696 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 696.0/696.0 kB 35.5 MB/s eta 0:00:00
Collecting wikipedia==1.4.0
Downloading wikipedia-1.4.0.tar.gz (27 kB)
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Collecting wikitextparser==0.51.1
Downloading wikitextparser-0.51.1-py3-none-any.whl (65 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 65.9/65.9 kB 10.1 MB/s eta 0:00:00
Requirement already satisfied: scikit-learn in /srv/conda/envs/notebook/lib/python3.9/site-packages (from factor-analyzer==0.4.1->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 2)) (1.0.2)
Requirement already satisfied: scipy in /srv/conda/envs/notebook/lib/python3.9/site-packages (from factor-analyzer==0.4.1->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 2)) (1.9.1)
Requirement already satisfied: pandas in /srv/conda/envs/notebook/lib/python3.9/site-packages (from factor-analyzer==0.4.1->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 2)) (1.4.4)
Collecting pre-commit
Downloading pre_commit-3.2.2-py2.py3-none-any.whl (202 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 202.7/202.7 kB 31.2 MB/s eta 0:00:00
Requirement already satisfied: numpy in /srv/conda/envs/notebook/lib/python3.9/site-packages (from factor-analyzer==0.4.1->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 2)) (1.21.5)
Collecting mpmath
Downloading mpmath-1.3.0-py3-none-any.whl (536 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 536.2/536.2 kB 39.2 MB/s eta 0:00:00
Requirement already satisfied: matplotlib in /srv/conda/envs/notebook/lib/python3.9/site-packages (from powerlaw==1.5->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 4)) (3.5.2)
Requirement already satisfied: setuptools>=40.8.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pywikibot==8.0.2->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 5)) (67.6.1)
Requirement already satisfied: requests>=2.21.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pywikibot==8.0.2->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 5)) (2.28.1)
Requirement already satisfied: beautifulsoup4 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from wikipedia==1.4.0->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 6)) (4.11.1)
Requirement already satisfied: wcwidth in /srv/conda/envs/notebook/lib/python3.9/site-packages (from wikitextparser==0.51.1->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 7)) (0.2.6)
Collecting regex>=2022.9.11
Downloading regex-2023.3.23-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (768 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 769.0/769.0 kB 21.7 MB/s eta 0:00:00
Requirement already satisfied: charset-normalizer<3,>=2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests>=2.21.0->pywikibot==8.0.2->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 5)) (2.0.4)
Requirement already satisfied: idna<4,>=2.5 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests>=2.21.0->pywikibot==8.0.2->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 5)) (3.4)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests>=2.21.0->pywikibot==8.0.2->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 5)) (1.26.15)
Requirement already satisfied: certifi>=2017.4.17 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests>=2.21.0->pywikibot==8.0.2->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 5)) (2022.12.7)
Requirement already satisfied: soupsieve>1.2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from beautifulsoup4->wikipedia==1.4.0->-r /home/jovyan/binder/condaenv.zviij9q3.requirements.txt (line 6)) (2.3.2.post1)
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Collecting virtualenv>=20.10.0
Downloading virtualenv-20.22.0-py3-none-any.whl (3.2 MB)
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Collecting cfgv>=2.0.0
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Collecting identify>=1.0.0
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Collecting nodeenv>=0.11.1
Downloading nodeenv-1.7.0-py2.py3-none-any.whl (21 kB)
Collecting pyyaml>=5.1
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Collecting filelock<4,>=3.11
Downloading filelock-3.12.0-py3-none-any.whl (10 kB)
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Building wheels for collected packages: emoji, factor-analyzer, wikipedia
Building wheel for emoji (setup.py): started
Building wheel for emoji (setup.py): finished with status 'done'
Created wheel for emoji: filename=emoji-2.2.0-py3-none-any.whl size=234911 sha256=5056791ada7d91535b50e65b442b22eda90f324e3526638e45783f2eb5970816
Stored in directory: /home/jovyan/.cache/pip/wheels/9a/b8/0f/f580817231cbf59f6ade9fd132ff60ada1de9f7dc85521f857
Building wheel for factor-analyzer (pyproject.toml): started
Building wheel for factor-analyzer (pyproject.toml): finished with status 'done'
Created wheel for factor-analyzer: filename=factor_analyzer-0.4.1-py2.py3-none-any.whl size=42014 sha256=7810768afdf3beb4a2dab57424aef9b5ab185b030f936b08389cb5379aca5d1b
Stored in directory: /home/jovyan/.cache/pip/wheels/6d/32/bd/460a71becd83f7d77152f437c2fd451f5c87bc19cfcdbfcd24
Building wheel for wikipedia (setup.py): started
Building wheel for wikipedia (setup.py): finished with status 'done'
Created wheel for wikipedia: filename=wikipedia-1.4.0-py3-none-any.whl size=11680 sha256=96530d75c964089e6f420a7fad8e008ccc8001ea98c83f62822e43b82119f6d9
Stored in directory: /home/jovyan/.cache/pip/wheels/c2/46/f4/caa1bee71096d7b0cdca2f2a2af45cacf35c5760bee8f00948
Successfully built emoji factor-analyzer wikipedia
Installing collected packages: mpmath, distlib, regex, pyyaml, nodeenv, mwparserfromhell, identify, filelock, emoji, cfgv, wikitextparser, wikipedia, virtualenv, pywikibot, pre-commit, powerlaw, factor-analyzer
Successfully installed cfgv-3.3.1 distlib-0.3.6 emoji-2.2.0 factor-analyzer-0.4.1 filelock-3.12.0 identify-2.5.23 mpmath-1.3.0 mwparserfromhell-0.6.4 nodeenv-1.7.0 powerlaw-1.5 pre-commit-3.2.2 pywikibot-8.0.2 pyyaml-6.0 regex-2023.3.23 virtualenv-20.22.0 wikipedia-1.4.0 wikitextparser-0.51.1
done
time: 205.324
Will remove 1 package cache(s).
time: 2.353
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sqlite 3.40.1 h5082296_0 defaults
srsly 2.4.6 py39h6a678d5_0 defaults
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
statsmodels 0.13.2 py39h7f8727e_0 defaults
terminado 0.17.1 pyh41d4057_0 conda-forge
textacy 0.11.0 py39hf3d152e_1 conda-forge
thinc 8.0.15 py39hae6d005_0 defaults
threadpoolctl 2.2.0 pyh0d69192_0 defaults
tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
toolz 0.12.0 py39h06a4308_0 defaults
tornado 6.2 py39hb9d737c_1 conda-forge
tqdm 4.65.0 py39hb070fc8_0 defaults
traitlets 5.9.0 pyhd8ed1ab_0 conda-forge
typer 0.4.1 py39h06a4308_0 defaults
typing-extensions 4.5.0 hd8ed1ab_0 conda-forge
typing_extensions 4.5.0 pyha770c72_0 conda-forge
tzdata 2023c h71feb2d_0 conda-forge
urllib3 1.26.15 pyhd8ed1ab_0 conda-forge
virtualenv 20.22.0 pypi_0 pypi
wasabi 0.9.1 py39h06a4308_0 defaults
wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 py_1 conda-forge
websocket-client 1.5.1 pyhd8ed1ab_0 conda-forge
wheel 0.40.0 pyhd8ed1ab_0 conda-forge
widgetsnbextension 3.5.2 py39h06a4308_0 defaults
wikipedia 1.4.0 pypi_0 pypi
wikitextparser 0.51.1 pypi_0 pypi
xlsxwriter 3.0.3 pyhd3eb1b0_0 defaults
xz 5.2.6 h166bdaf_0 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zipp 3.15.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h166bdaf_4 conda-forge
zstd 1.5.2 ha4553b6_0 defaults
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