Comments (3)
Well, one could override the make target for the offending object file. That's what I did for compiling samtools which also did not compile with -Werror
.
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That seems like good solution. Of course, you can also replace libtre with another library which gives us the functionality of regex.h on Windows. libtre seemed like a good solution at the time, but I'm not so sure anymore.
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this seems to be a problem of ccache with clang. It compiles fine without ccache. This is not the first error where compiling something using ccache clang does not work. But as it compiles fine without ccache, this can be closed.
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Related Issues (20)
- Running LTRharvest/digest with parallel HOT 5
- gt gff3 -sortlines fails on particular gff HOT 11
- Difficulty extracting intronic regions HOT 2
- There is no -retainids when using ltrdigest, Why don't add one? HOT 2
- We need to run tirvish two times for a single genome? HOT 1
- Install error: cairo.h: No such file or directory on RedHat 7 HOT 2
- How to test whether the GenomeTools library is installed properly HOT 1
- After installation, how to use and test whether the function is normal? HOT 4
- bed_to_gff3 bug HOT 9
- error: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Werror=unused-result] HOT 3
- LtrPipeline: GenomeTools failed to run ltrharvest. Error code: 139 HOT 4
- gff3validator "Sequence Ontology" out of date? HOT 3
- Assertion error: gt_feature_node_remove_leaf HOT 2
- gt gff3 loss of intergenic regions HOT 1
- sketch all non-overlapping genes on one track HOT 4
- -Werror is for CI + developer only HOT 4
- Fails to build on macOS Ventura / Xcode 14.x HOT 3
- New build warnings on GCC 13 turned errors are blocking builds HOT 1
- Build time issue with GenomeTools 1.5.9 HOT 5
- Aborted (core dumped) with LTR harvest HOT 5
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