Coder Social home page Coder Social logo

pebbles's People

Contributors

genomematt avatar

Stargazers

avatar avatar

Watchers

avatar avatar

Forkers

nickzoic

pebbles's Issues

Handle absence of MD tags better

If reads don't have MD tags an error is logged to the console.
This probably should raise a more visible error in the GUI as it will result in no variants being found

Previews in countess

Currently there is no mechanism to process a limited number of reads for generating a preview.
This means the countess interface generates a preview from a full run, making it inefficient and unresponsive.

Combining multiple files does not work

Traceback (most recent call last):
File "/Users/wakefield/PycharmProjects/CountESS/countess/core/pipeline.py", line 53, in execute
self.result = self.plugin.run(input_data, logger, row_limit)
File "/Users/wakefield/PycharmProjects/CountESS/countess/core/plugins.py", line 176, in run
df = self.load_files(logger, row_limit)
File "/Users/wakefield/PycharmProjects/CountESS/countess/core/plugins.py", line 301, in load_files
callback(num_files, num_files + 1, "Combining")
NameError: name 'callback' is not defined

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.