gauravcodepro / pacbiohifi-seq-app

a single page shiny express pacbiohifi-seq-app for sequencing facility or startups

pacbiohifi-seq-app

• a single page shiny express pacbiohifi-seq-app for profiling of the pacbiohifi sequencing reads sequencing facility or startups.
• shiny API reference is located at python API and also here express API
• You can also host on tapyr template template
• parameters to set: fastq file path, readfiltercutoff, provide the name and the address of the sequencing facility, provide the name and the person responsible for sequencing.
• installation dependencies

# First install htmltools, then shiny
pip install https://github.com/posit-dev/py-htmltools/tarball/main
pip install https://github.com/posit-dev/py-shiny/tarball/main
pip install shiny
pip install shinywidgets
pip install shinylive
pip install shinyswatch

• to use and build a dashboard will be build for the complete analysis including the name of the sequencing facility or center and the person

git clone https://github.com/gauravcodepro/pacbiohifi-seq-app.git
cd pacbiohifi-seq-app
# put the fastq reads files there. provide the parameters and run as 
shiny run pacbiohifi-seq-app.py app.py --reload

• To do today: bin according to the struger rule, bug check

Gaurav