Name: niklas breitenbach-netter
Type: User
Bio: I studied physics at Philipps University Marburg. Currently I am working at Drescher Lab in the field of image analysis and biophysics in the Biozentrum, Basel.
Twitter: gatoniel1
Location: Basel, Switzerland
Blog: https://gatoniel.github.io/
niklas breitenbach-netter's Projects
self-supervised segmentation of single species shapes via cycleGAN or differentiable rendering.
Profile for running snakemake with slurm job submissions
Python package for the spatial-biofilm-sorting project.
Simple webserver that grants creation of a linux user after succesfull SSO authentication / authorization
StarDist - Object Detection with Star-convex Shapes
StarDist plugin for napari
Combined StarDist segmentation on time stacks.
A VAE on basis of the kappa-stereographic models from geoopt for link prediction and node classification.
Analysis of transcription data with VAEs and non-euclidean latent spaces.
Mechanism for runtime configuration of spawners for JupyterHub