Name: niklas breitenbach-netter
Type: User
Bio: I studied physics at Philipps University Marburg. Currently I am working at Drescher Lab in the field of image analysis and biophysics in the Biozentrum, Basel.
Twitter: gatoniel1
Location: Basel, Switzerland
Blog: https://gatoniel.github.io/
niklas breitenbach-netter's Projects
Cookiecutter for napari plugins
Image restoration for fluorescence microscopy
Julia implementations of Data-Driven Modelling & Scientific Computation, J. Nathan Kutz, Oxford University Press, 2013
Documentation for napari (other than API docs)
dotfiles
The Python micro framework for building web applications.
Library with utils and helpers for myself.
Riemannian Adaptive Optimization Methods with pytorch optim
A good enough project template for writing reproducible code
Files to create ImJoy containers. Mainly Docker.
Multi-user server for Jupyter notebooks
SELinux Policies for a JupyterHub Daemon
Merge StarDist Masks - additional postprocessing for StarDist
Mixed-curvature Variational Autoencoders (ICLR 2020)
This is the implementation of Noise2Void training.
napari: a fast, interactive, multi-dimensional image viewer for python
Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images
Open separate tif files in napari as n-d file.
Segment non-star-convex objects with StarDist by merging masks.
Look through separate nd2 files in one viewer.
This napari plugin creates a 2d projection of all your points.
Plugin to investigate the differences between a segmentation and the ground truth.
Simple plugin that opens separate .tif files as a 3-dimensional layer.
Validate separate instances of label predictions manually
libpod is a library used to create container pods. Home of Podman.
Spawner to use podman with JupyterHub
A PCA and calculation of means for projective space.
PCA and calculation of Frechet mean for projective space or sphere.
code for "Continuous Hierarchical Representations with Poincaré Variational Auto-Encoders".