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mummer

Mummer alignment tool

mxt

Analyzes an amino acid sequence to find the parts that are likely coded by specific DNA that may cause illness.

my_first_repo

The first Github Repo i created durnig programming class

myfirstfork

Fork this repository and make changes to the README

mypracticerepo

mypracticewithrepo

This repo is created with the intention to learn how to use repo

ngs_bio_africa

ngsbioafrica_module-1_-intro-to-unix-linux

oncode_mc

Course materials for Oncode Masterclass: Introduction to machine learning in cancer genomics on the 18th November 2020 by Jeroen de Ridder's group (UMC Utrecht) in collaboration with Lodewyk Wessel and Soufiane Mourragui (NKI).

ont_analysis

orthofinder

Phylogenetic orthology inference for comparative genomics

pathogen-informatics-training

peer_workshop

python4bioinformatics2020

pythondatasciencehandbook

Python Data Science Handbook: full text in Jupyter Notebooks

read_alignment

rna_seq

rstudio-feedstock

A conda-smithy repository for rstudio.

scientific-python-lectures

Lectures on scientific computing with python, as IPython notebooks.

seminar_presentations

seqtk

Toolkit for processing sequences in FASTA/Q formats

sga

de novo sequence assembler using string graphs

sydneyphyloworkshop

Sydney Phylogenetics Workshop

test-repo

trainingphylointro

Practical exercises and slides for my computational molecular evolution teaching

tutorials-software-guide

Contains guide on how to run graphical software's, Pipelines and tutorials on sample use cases of analysis on the cluster.

unix

unix-training

A set of jupyter notebooks to provide unix training developed by Pathogen Informatics at Wellcome Sanger Institute.

variant-calling

variant_calling