JSONDecodeError for executing show_workflow() about bioblend

[afgane]

Hi Hyungro,
Could you possibly upload your workflow to Galaxy Main and see if it works there. If not, would it be possible to export your workflow and send it to me so I can give it a shot?
I just ran the code you sent against one my workflows on Galaxy Main and the code works fine.

[lee212]

I uploaded it to Galaxy Main here:
https://main.g2.bx.psu.edu/u/hyungro-lee/w/workflow-constructed-from-history-unnamed-history-imported-from-uploaded-file

I also attached the .ga file here.

I tried other workflows and it seems they are working fine but not this
one. Maybe it includes corrupted texts?

Thanks,
Hyungro

On Fri, Jul 19, 2013 at 6:25 AM, Enis Afgan [email protected]:

Hi Hyungro,
Could you possibly upload your workflow to Galaxy Main and see if it works
there. If not, would it be possible to export your workflow and send it to
me so I can give it a shot?
I just ran the code you sent against one my workflows on Galaxy Main and
the code works fine.

—
Reply to this email directly or view it on GitHubhttps://github.com/afgane/bioblend/issues/31#issuecomment-21248940
.

[afgane]

Hmm, I just imported your workflow on Galaxy Main, renamed it to 'Shared_bioblend' and used bioBlend to run the command you're having trouble with and it worked fine.
What version of BioBlend are you running? Try updating it if it's out of date (e.g., pip install -U bioblend)

[lee212]

It might be other package dependencies or my system settings, I guess?
Apparently, I've installed bioblend 0.3.3.

I can try other systems and compose new workflows.

On Fri, Jul 19, 2013 at 7:11 AM, Enis Afgan [email protected]:

Hmm, I just imported your workflow on Galaxy Main, renamed it to
'Shared_bioblend' and used bioBlend to run the command you're having
trouble with and it worked fine.
What version of BioBlend are you running? Try updating it if it's out of
date (e.g., pip install -U bioblend)

—
Reply to this email directly or view it on GitHubhttps://github.com/afgane/bioblend/issues/31#issuecomment-21251660
.

[afgane]

Hmm, when installed, pip grabs/updates all the dependencies for BioBlend during installation so not sure why is this would be happening. Does the name of the workflow have any 'funny' characters? Didn't seem to be the case based on the shared workflow you sent earlier...
And it's only with this one workflow?

[lee212]

I tried two workflows and this 'Unnamed history' is the only one didn't
work via BioBlend so far. The workflow is mainly from Galaxy 101 tutorial
so I think it might not have unusual characters. I also tried pip install
bioblend --upgrade and it seemed to re-install all dependencies as well.
However, the issue is not resolved.

On Fri, Jul 19, 2013 at 9:16 AM, Enis Afgan [email protected]:

Hmm, when installed, pip grabs/updates all the dependencies for BioBlend
during installation so not sure why is this would be happening. Does the
name of the workflow have any 'funny' characters? Didn't seem to be the
case based on the shared workflow you sent earlier...
And it's only with this one workflow?

—
Reply to this email directly or view it on GitHubhttps://github.com/afgane/bioblend/issues/31#issuecomment-21259983
.

[nsoranzo]

I cannot replicate when running gi.workflows.show_workflow('b62535ba597d3323'), feel free to reopen if it is still an issue.