Comments (3)
I looked at the url and parameters, and that seems to be fine, or not?
http://<my_galaxy_installation>/api/workflows
{"workflow_id": "ba751ee0539fff04", "ds_map": {"787": {"src": "ld", "id": "113b5e0ab7b052dd"}, "783": {"src": "ld", "id": "999d792a6e3b4811"}}, "history": "Test API run"}
Or do you need a really up to date Galaxy installation, I think ours is a few months old...
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hmm.. That's strange.. I tried running it and the output should be something like:
dict: {u'outputs': [u'cbd2f8609a07ba0f', u'1acfeac2a76d20aa', u'525257355474ea21', u'8c8f126dfd80abc7', u'86d72beb9ee5224a', u'23b0fdbdd9ba1baa', u'37414f5384a56c44', u'4e5f62759d24c949'], u'history': u'aafa12596726730d'}
The output you are getting looks more like the output from show_workflow.
Can you provide more context? e.g. The code constructing the GalaxyInstance etc.
The url doesn't look right, but then, it should have flatly refused to connect with a url like that.
In your case, you actually do get a json response back - although for a different method by the looks of it.
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I tried it with a new checkout of galaxy and now the API works fine! It just seems I have to update my current galaxy instance.
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Related Issues (20)
- Method to cancel a job
- Add type annotations to BioBlend API HOT 2
- Rebuild docs with sphinx-apidoc
- Add an `invoke()` method to the BioBlend.objects `Workflow` class
- Fix unreliable tests
- Add tests for bioblend.toolshed
- 'GalaxyInstance' raises AttributeError when instantiated with email & password combination HOT 2
- Incorrect PyYAML version for bioblend 0.9.0 - 0.16.0 HOT 1
- Getting abosl HOT 1
- Error when trying to get ids of workflow outputs HOT 13
- partial workflow invocation HOT 9
- Drop cloudlaunch support ? HOT 4
- Add support for parameter "all" in get_histories HOT 2
- Tool search in Toolshed: number total results HOT 6
- File name displayed as Pasted Entry for file uploaded using upload_file_contents HOT 2
- Downloading a file from a shared data library HOT 3
- Extend bioblend to support the new notification API HOT 3
- Bioblend reporting workflow as failed while workflow is running or completed successfully. HOT 6
- workflows.refactor_workflows fails on subworkflows HOT 14
- Allow Session Cookies in Requests HOT 1
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