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License: Apache License 2.0
The browser extensible data (BED) file format describes genomic intervals on chromosomes or scaffolds
License: Apache License 2.0
Hello,
Recently there was some work with BED files and RefSeq/Genbank chromosome IDs which typically have a period in them for versioning purposes (e.g. "NC_000001.11"). This is currently not allowed as-is in the spec. Only alphanumeric characters are allowed.
I e-mailed Jim Kent regarding this issue and this is what he had to say:
"Yes, I would consider this an error. All of our parsers are good with anything but white space there. Most of our utilities will handle spaces if you throw in a -tab option, but I wouldn't want to encourage that."
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