Comments (2)
Your samples may have an excessive number of zero values if you do not filer them down. This will cause an issue while conducting unbiased estimation.
from ancombc.
Thanks for your answer.
Is there is way, hopefully a code I can use it with the phyloseq object I have to fix this problem ?
from ancombc.
Related Issues (20)
- Installing ANCOMBC HOT 2
- Continuous variable as main variable of interest
- Different results with ancombc2 depending on the order of the taxa
- Visualization the output of ancombc2
- Pseudo-count sensitivity testing when no pseudo-counts are added
- Error in { : task 1 failed - "values must be length 1, but FUN(X[[2]]) result is length 0"
- Help with ancombc2 analysis with repeated measures
- Extract normalised counts for linear models outside of ANCOMBC?
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- global test and pairwise comparisons giving pvals of all NA or all 1
- Feature Request: Support for Using Taxa as Explanatory Variables in ANCOMBC2
- "Error: subscript contains invalid names" when running ancombc2 HOT 3
- Interpreting error when running ancombc2 function: Error in is.infinite(o1) : default method not implemented for type 'list'
- NAs and 1s in ancombc2 primary result table HOT 1
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- Testing interactions: global test using F test with approximate degrees of freedom instead of LRT
- Error for specific dataset when using rand_formula "contrasts can be applied only to factors with 2 or more levels"
- q-values (adjusted p-values) too low for continuous variable
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from ancombc.