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Huang (Frederick) Lin's Projects

ancom-bc-code-archive icon ancom-bc-code-archive

Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.

ancom-bc2-code-archive icon ancom-bc2-code-archive

Archive: Data, scripts, and outputs for the paper "Multi-group Analysis of Compositions of Microbiomes with Covariate Adjustments and Repeated Measures". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.

ancom-code-archive icon ancom-code-archive

Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM function.

ancombc icon ancombc

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

gut-microbiome-and-hiv-infection icon gut-microbiome-and-hiv-infection

Scripts and outputs for the paper "Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM"

gut-microbiome-and-sexual-behavior icon gut-microbiome-and-sexual-behavior

Scripts and outputs for the manuscript "The effect of sexual behavior on HIV-1 seroconversion is mediated by the gut microbiome and proinflammatory cytokines"

microbiome-review-code-archive icon microbiome-review-code-archive

Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and differential abundance analysis"

oral-microbiome-and-chemical-exposure icon oral-microbiome-and-chemical-exposure

The archive for data, scripts, and outputs for the paper "Exposure to antibacterial chemicals is associated with altered composition of oral bacteria; the RHINESSA study, Bergen, Norway".

secom-code-archive icon secom-code-archive

Archive: Data, scripts, and outputs for the paper "Sparse Estimation of Correlations among Microbiomes (SECOM)". Please check our ANCOMBC R package for the most up-to-date SECOM functions.

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