frankligy / bmin7099

BMIN7099/CS7099: Introduction to bioinformatics, University of Cincinnati, Spring semester 2022

BMIN7099

BMIN7099/CS7099: Introduction to Bioinformatics, University of Cincinnati, Spring Semester 2022

I will post relevant coding mateials and example codes for the course as needed. Consider them as further reading materia for fun, no pressure at all to understand all of them. Enjoy the class!

Index

1. Basic Linux Shell commands
2. Exact matching and alignment problem
   1. Summary
   2. How to implement suffix tree in Python?
3. Genome Annotation
   1. Summary
4. Transcript Quantification
   1. Summary
5. Single-cell RNA analysis
   1. Link to my slides
6. Inexact match
   1. Summary
7. Phylogeny
   1. Summary
8. HMM
   1. A Must Read for HMM model
9. Protein Structure Prediction
   1. Summary

Contact

Guangyuan(Frank) Li

Email: [email protected]

PhD student, Biomedical Informatics

Cincinnati Children’s Hospital Medical Center(CCHMC)

University of Cincinnati, College of Medicine