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2016-aug-nonmodel-rnaseq

2016-mar-nonmodel

2018-03-06-ibioic

Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.

adv-r

Advanced R programming: a book

advdatasci_part_1

:signal_strength: The First swirl Course for Advanced Data Science at JHU

agouti

Annotated Genome Optimization Using Transcriptome Information

alien_index

identify potential non-animal transcripts in animal transcriptomes

alignment_filtering

Code and data for "Limited Utility of Residue Masking for Positive-Selection Inference," by SJS, ETD, COW.

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

assemblage

Tools for working with second gen assemblies, fasta sequences, etc

assemblathon2-analysis

collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

assemblers

assembly-stats

Assembly statistic visualisation

asthma

RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)

atd

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-datascience

:memo: An awesome Data Science repository to learn and apply for real world problems.

awesome-r-dataviz

Curated resources about Data Visualization, Drawing & Publishing in R

baitfisher-package

The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:

bamtools

C++ API & command-line toolkit for working with BAM data

bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

bbmap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

berlintrinityworkshop2017

workshop in Berlin, mid-June 2017

bin

My bioinfo toolbox

bio-pipeline

My collection of light bioinformatics analysis pipelines for specific tasks

biocode

Bioinformatics code libraries and scripts

bioinformatics-training

Bioinformatics training resources

bioinformatics-workshops

Workshops presented by the Gladstone Bioinformatics Core