fimrie / reproducible-computational-workflows

A Practical Introduction to Reproducible Computational Workflows (ISMB/ECCB 2019 Tutorial AM4)

A Practical Introduction to Reproducible Computational Workflows

ISMB / ECCB 2019, July 21, Basel, Switzerland

Peter W. Rose, Structural Bioinformatics Lab, San Diego Supercomputer Center, UC San Diego, USA

Tim Head, Project member Jupyter Hub & mybinder.org and Wild Tree Tech, Brugg, Switzerland

Fergus Boyles, Oxford Protein Informatics Group, Department of Statistics, University of Oxford, United Kingdom

Fergus Imrie, Oxford Protein Informatics Group, Department of Statistics, University of Oxford, United Kingdom

Introduction

This repository contains all the materials for the above ISMB/ECCB workshop.

Prerequisites

Before the conference starts, please follow the instructions here to set everything up.

Schedule

Time	Topic	Key Materials
9:00 - 9:30	Introduction	Slides
9:30 - 9:45	Conda	Instructions
9:45 - 10:15	Jupyter	Instructions Intro Notebook 3D Visualization Notebook
10:15 - 11:00	Git and GitHub	Slides Instructions
11:00 - 11:15	Break	Coffee!
11:15 - 11:45	Binder	Slides Instructions
11:45 - 12:45	Projects	Instructions SCOP Class Prediction: Slides, Notebook 3D Visualization: Notebook
12:45 - 13:00	Wrap Up	Slides Survey/Feedback

Launch Workshop on Mybinder.org

Jupyter Notebook

Jupyter Lab

Contact Us

If you encounter any problems with this repository, please report them here.