Comments (2)
In proDA
you specify the contrasts differently than in prolfqua, But I think I can work around it using
run_wald_parameter_test
(currently private function).
seems that the second argument it takes is:
(Intercept) Treatmentplacebo
Treatment16mg 1 0
Treatmentplacebo 1 1
16mgvsPlacebo 0 -1
from prolfqua.
It seems that proDA now has a contrast interface similar to that of prolfqua
https://bioconductor.org/packages/release/bioc/vignettes/proDA/inst/doc/Introduction.html
from prolfqua.
Related Issues (20)
- Rename ContrastsSimpleImpute to ContrastsMissing.
- Add Precision Recall plot to Benchmark class
- Remove plot_FDPvsTPR from Benchmark
- DiaNN read report function HOT 3
- Error with setup_analysis() HOT 4
- Error at normalisation step HOT 5
- Sample Rscript to process fragpipe lfqMBR outputfile HOT 1
- FragPipe v.19.1 combined_protein output not working with prolfqua::tidy_FragPipe_combined_protein HOT 1
- Reduce package size HOT 2
- Citation points to bioRxiv HOT 1
- color densities using factor variable
- Glm support HOT 1
- add in-silico talk HOT 1
- volcano plot with fixed ylim (scales) cannot be "freed up" with scales="free" HOT 5
- Issue with setup_analysis in comparing2groups vignette HOT 11
- review ContrastsMissing get_contrasts HOT 3
- Contrast function mixes conditions in WaldTest output HOT 5
- remove dependecy on DT
- remove dependencies from basic model and interaction model
- simulate additional data
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from prolfqua.