Related Issues (20)
- CoGAPS does not learn to specifed nPatterns when runnign in dsitributed mode HOT 4
- Enable the Checkpoints HOT 2
- patternMarkers 'all' returning empty lists HOT 4
- Refactor - add comments
- Refactor - patternMarkers() HOT 2
- getPatternGeneSet gives wrong gene.set names HOT 4
- fix `threshold="cut"` mode
- Warning: Large values detected, is data log transformed? HOT 1
- Seeking Clarification on Functions in the CoGAPS Package HOT 2
- Confusion Regarding patternMarkers Results HOT 2
- Cpp tests
- Standard deviation when running distributed
- Vignettes fail on querying ENSEMBL
- Error when performing getPatternHallmarks: Error in 'collect()' HOT 9
- Replace Ensemble dependency and Add overrepresentation and enrichment tests for gene sets in patterns
- Confusion on the parallelization of R CoGAPS HOT 5
- GSEA algorithms for the function getPatternHallmarks HOT 9
- Too long runtime for GoGAPS R HOT 2
- Semisupervised CoGAPS
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