Comments (2)
dimalvovs
commented on August 25, 2024
The checkpoints are disabled by default:
>
> library("CoGAPS")
> packageVersion("CoGAPS")
[1] ‘3.24.0’
> CoGAPS::checkpointsEnabled()
[1] FALSE
It looks like these are disabled in
Line 3241 in cc8c42c
Potentially could be enabled by removing the -DGAPS_DISABLE_CHECKPOINTS flag.
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dimalvovs
commented on August 25, 2024
Related to #49
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Related Issues (20)
- CoGAPS does not learn to specifed nPatterns when runnign in dsitributed mode HOT 4
- patternMarkers 'all' returning empty lists HOT 4
- Refactor - add comments
- Refactor - patternMarkers() HOT 2
- getPatternGeneSet gives wrong gene.set names HOT 4
- fix `threshold="cut"` mode
- Warning: Large values detected, is data log transformed? HOT 1
- Seeking Clarification on Functions in the CoGAPS Package HOT 2
- Confusion Regarding patternMarkers Results HOT 2
- Cpp tests
- Standard deviation when running distributed
- Vignettes fail on querying ENSEMBL
- Error when performing getPatternHallmarks: Error in 'collect()' HOT 9
- Replace Ensemble dependency and Add overrepresentation and enrichment tests for gene sets in patterns
- Confusion on the parallelization of R CoGAPS HOT 5
- GSEA algorithms for the function getPatternHallmarks HOT 9
- default number of patterns
- Too long runtime for GoGAPS R HOT 2
- Semisupervised CoGAPS
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