COVID-19 Italy Monitor | #StayAtHome

A simple dashboard to display and monitor the official data of the COVID-19 outbreak in Italy, released by the Italian Civil Protection Dept., and the vaccination-status data, released by Italia Open Data.

The app is deployed on an AWS EC2 instance here

Pandemic data from the official CP Dept repository

Vaccine data from the official open-data repository

For developers

The WebApp requires Python 3.10 and reads the data from a mongoDB. It employs a Flask server with gunicorn in front of it. Furthermore, it employs Flask-babel for the italian translation, as English is set as primary language. The script make_pot.sh creates the files needed by Babel for the translations. A Batch version of the script for Windows users is provided. The app language is decided upon the client request (browser / OS).

The front-end lives under covidashit/templates and it uses JS to create the chart object, which is built using HighCharts.

In order for the app to be operational, a mongoDB must be populated (see here for the creation of an Atlas mongoDB free cluster). The backend is populated by covidashflow - an Apache-Airflow ETL - which reads the pandemic data from the master branch of the PCM-DPC repository, and the vaccines data from the master branch of the Italia Open Data repository

Local deployment (DEV)

create and activate a virtual environment (follow this)
install the requirements via poetry pip install --upgrade pip poetry && poetry install

The .env file contains all the env vars needed by the webapp. In particular, the MONGO_URI and the various collection names string must be set. The values of these variables should match those in covidashflow The WebApp should start without errors even if the backend is empty; no data will be visualized.

Clone the repo, cd into it, activate the virtual environment, run the application server

gunicorn wsgi:app

Docker

To test the containerization locally spawn the container with:

docker-compose up -d

The docker container will be listening at http://127.0.0.1:PORT with PORT being set in the .env file

Stop it with

docker-compose down

Plots API

The app provides an API to produce plots with matplotlib. The API can return a JSON response with the base64-encoded image, or the bytes content to be saved as a file.

Resource URL

https://www.covidash.it/api/plot

Query parameters

data_type	var_name	area
national	[nuovi_positivi, ingressi_terapia_intensiva, deceduti_g, tamponi_g,totale_ospedalizzati_g, nuovi_positivi_ma, deceduti_g_ma, ingressi_terapia_intensiva_ma, tamponi_g_ma, totale_ospedalizzati_g_ma, totale_positivi, terapia_intensiva, ricoverati_con_sintomi, totale_ospedalizzati, isolamento_domiciliare, totale_casi, deceduti, tamponi, dimessi_guariti]	N/A
regional	[nuovi_positivi, ingressi_terapia_intensiva, deceduti_g, tamponi_g,totale_ospedalizzati_g, nuovi_positivi_ma, deceduti_g_ma, ingressi_terapia_intensiva_ma, tamponi_g_ma, totale_ospedalizzati_g_ma, totale_positivi, terapia_intensiva, ricoverati_con_sintomi, totale_ospedalizzati, isolamento_domiciliare, totale_casi, deceduti, tamponi, dimessi_guariti]	[Abruzzo, Basilicata, Calabria, Campania, Emilia-Romagna, Friuli Venezia Giulia, Lazio, Liguria, Lombardia, Marche, Molise, Piemonte, Puglia, Sardegna, Sicilia, Toscana, P.A. Bolzano, P.A. Trento, Umbria, Valle d'Aosta, Veneto]
provincial	[nuovi_positivi, nuovi_positivi_ma, totale_casi]	[Chieti, L'Aquila, Pescara, Teramo, Matera, Potenza, Catanzaro, Cosenza, Crotone, Reggio di Calabria, Vibo Valentia, Avellino, Benevento, Caserta, Napoli, Salerno, Bologna, Ferrara, Forlì-Cesena, Modena, Parma, Piacenza, Ravenna, Reggio nell'Emilia, Rimini, Gorizia, Pordenone, Trieste, Udine, Frosinone, Latina, Rieti, Roma, Viterbo, Genova, Imperia, La Spezia, Savona, Bergamo, Brescia, Como, Cremona, Lecco, Lodi, Mantova, Milano, Monza e della Brianza, Pavia, Sondrio, Varese, Ancona, Ascoli Piceno, Fermo, Macerata, Pesaro e Urbino, Campobasso, Isernia, Alessandria, Asti, Biella, Cuneo, Novara, Torino, Verbano-Cusio-Ossola, Vercelli, Bari, Barletta-Andria-Trani, Brindisi, Lecce, Foggia, Taranto, Cagliari, Nuoro, Sassari, Sud Sardegna, Agrigento, Caltanissetta, Catania, Enna, Messina, Palermo, Ragusa, Siracusa, Trapani, Arezzo, Firenze, Grosseto, Livorno, Lucca, Massa Carrara, Pisa, Pistoia, Prato, Siena, Perugia, Terni, Aosta, Belluno, Padova, Rovigo, Treviso, Venezia, Verona, Vicenza]

Examples

National plot

GET /api/plot?data_type=national&varname=<varname>

Regional plot

GET /api/plot?data_type=regional&area=<region>&varname=<varname>

Provincial plot

GET /api/plot?data_type=provincial&area=<province>&varname=[nuovi_positivi,nuovi_positivi_ma,totale_casi]>

To get the base64-encoded image in a JSON response

JSON

Request

curl --request GET \ 
     --url 'https://www.covidash.it/api/plot?data_type=national&varname=totale_casi'

Response

{
    "errors":[],
    "img":"iVBORw0KGgoAA...",
    "status":"ok"
}

To download the file

Request

curl --request GET \
     --url 'https://www.covidash.it/api/plot?data_type=national&varname=totale_casi&download=true' \
     --output plot.png

The plot will be saved in ./plot.png

Plot preview

Donation

If you liked this project or if I saved you some time, feel free to buy me a beer. Cheers!

fabriziomiano / covidashit Goto Github PK

covidashit's Introduction

COVID-19 Italy Monitor | #StayAtHome

For developers

Local deployment (DEV)

Docker

Plots API

Resource URL

Query parameters

Examples

National plot

Regional plot

Provincial plot

To get the base64-encoded image in a JSON response

JSON

Request

Response

To download the file

Request

Plot preview

Donation

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