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application_development_notes

autocomplete

Blazing fast and lightweight autocomplete widget without dependencies. Only 1KB gzipped. Demo:

azure-sdk-for-python

This repository is for active development of the Azure SDK for Python. For consumers of the SDK we recommend visiting our public developer docs at https://docs.microsoft.com/python/azure/ or our versioned developer docs at https://azure.github.io/azure-sdk-for-python.

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bootstrap-tour

Quick and easy product tours with Twitter Bootstrap Popovers

c_programming_notes

cli

The Docker CLI

clt-ds-performance

Command-line tools performance for data analysis

cpython

The Python programming language

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

data.table

R's data.table package extends data.frame:

dbsnp

dbSNP

distsysbook

The book Distributed systems: for fun and profit

doc-annovar

Documentation for the ANNOVAR software

dockerfile_reference_revisited

Notes, tips and issues that may be useful for docker development

eyherabh

eyherabidehg2008a

Burst firing is a neural code in an insect auditory system

eyherabidehg2009a

Bursts generate a non-reducible spike pattern code

eyherabidehg2013a

When and why noise correlations are important in neural decoding

eyherabidehg2016a

Disambiguating the role of noise correlations when decoding neural populations together

eyherabidehg2016b

Neural Stochastic Codes, Encoding and Decoding

fp_arithmetic

Collection of comments on floating-point arithmetic (e.g. rounding in GCC) for future reference to myself that may also be useful for others.

fsharp_notes

Notes while learning f# that might be of interest in the future

genetic_map_comparisons

Comparison of genetic maps provided with different genetic phasing and imputation tools

gtctovcf

Script to convert GTC/BPM files to VCF

jq_parsing_ncbi_dbsnp

Using jq for parsing NCBI dbsnp json files

keyring

:closed_lock_with_key: Access the system credential store from R

nextflow

A DSL for data-driven computational pipelines

on_rounding_probabilities

Notes about rounding probabilities

plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.