NotADirectoryError when importing exoplanet about exoplanet

[mrtommyb]

I can install fine from pip install exoplanet

[dfm]

How did you install from the github clone?

[mrtommyb]

good question. I'm not sure. If I was following your instructions then python setup.py install. But I may have done pip install -e .

[dfm]

OK. Well if you do:

git clone --recursive https://github.com/dfm/exoplanet.git
cd exoplanet
python setup.py install

Everything should work.

[mrtommyb]

Ok, I did a fresh install and i got the same error.

[mrtommyb]

NotADirectoryError: [Errno 20] Not a directory: '/Users/tom/anaconda3/lib/python3.6/site-packages/exoplanet-0.1.2.dev0-py3.6.egg/exoplanet/theano_ops/starry/get_cl_rev.cc'

[dfm]

And you included --recursive and you first did pip uninstall exoplanet?

[mrtommyb]

yes to both.

[dfm]

In that case, try:

python setup.py develop

instead!

[mrtommyb]

here's what I get when i run the unit tests

~/g/exoplanet   master   py.test -v
==================================================== test session starts ====================================================
platform darwin -- Python 3.6.5, pytest-4.0.1, py-1.5.3, pluggy-0.8.0 -- /Users/tom/anaconda3/bin/python
cachedir: .pytest_cache
rootdir: /Users/tom/gitcode/exoplanet, inifile: pytest.ini
plugins: remotedata-0.2.1, openfiles-0.3.0, doctestplus-0.1.3, arraydiff-0.2
collected 31 items / 10 errors

========================================================== ERRORS ===========================================================
_____________________________________ ERROR collecting exoplanet/distributions_test.py ______________________________________
import file mismatch:
imported module 'exoplanet.distributions_test' has this __file__ attribute:
  /Users/tom/gitcode/exoplanet/build/lib/exoplanet/distributions_test.py
which is not the same as the test file we want to collect:
  /Users/tom/gitcode/exoplanet/exoplanet/distributions_test.py
HINT: remove __pycache__ / .pyc files and/or use a unique basename for your test file modules
______________________________________ ERROR collecting exoplanet/light_curves_test.py ______________________________________
import file mismatch:
imported module 'exoplanet.light_curves_test' has this __file__ attribute:
  /Users/tom/gitcode/exoplanet/build/lib/exoplanet/light_curves_test.py
which is not the same as the test file we want to collect:
  /Users/tom/gitcode/exoplanet/exoplanet/light_curves_test.py
HINT: remove __pycache__ / .pyc files and/or use a unique basename for your test file modules
______________________________________ ERROR collecting exoplanet/gp/celerite_test.py _______________________________________
import file mismatch:
imported module 'exoplanet.gp.celerite_test' has this __file__ attribute:
  /Users/tom/gitcode/exoplanet/build/lib/exoplanet/gp/celerite_test.py
which is not the same as the test file we want to collect:
  /Users/tom/gitcode/exoplanet/exoplanet/gp/celerite_test.py
HINT: remove __pycache__ / .pyc files and/or use a unique basename for your test file modules
____________________________________ ERROR collecting exoplanet/orbits/keplerian_test.py ____________________________________
import file mismatch:
imported module 'exoplanet.orbits.keplerian_test' has this __file__ attribute:
  /Users/tom/gitcode/exoplanet/build/lib/exoplanet/orbits/keplerian_test.py
which is not the same as the test file we want to collect:
  /Users/tom/gitcode/exoplanet/exoplanet/orbits/keplerian_test.py
HINT: remove __pycache__ / .pyc files and/or use a unique basename for your test file modules
_______________________________ ERROR collecting exoplanet/theano_ops/celerite/factor_test.py _______________________________
import file mismatch:
imported module 'exoplanet.theano_ops.celerite.factor_test' has this __file__ attribute:
  /Users/tom/gitcode/exoplanet/build/lib/exoplanet/theano_ops/celerite/factor_test.py
which is not the same as the test file we want to collect:
  /Users/tom/gitcode/exoplanet/exoplanet/theano_ops/celerite/factor_test.py
HINT: remove __pycache__ / .pyc files and/or use a unique basename for your test file modules
_______________________________ ERROR collecting exoplanet/theano_ops/celerite/solve_test.py ________________________________
import file mismatch:
imported module 'exoplanet.theano_ops.celerite.solve_test' has this __file__ attribute:
  /Users/tom/gitcode/exoplanet/build/lib/exoplanet/theano_ops/celerite/solve_test.py
which is not the same as the test file we want to collect:
  /Users/tom/gitcode/exoplanet/exoplanet/theano_ops/celerite/solve_test.py
HINT: remove __pycache__ / .pyc files and/or use a unique basename for your test file modules
____________________________ ERROR collecting exoplanet/theano_ops/kepler/contact_points_test.py ____________________________
import file mismatch:
imported module 'exoplanet.theano_ops.kepler.contact_points_test' has this __file__ attribute:
  /Users/tom/gitcode/exoplanet/build/lib/exoplanet/theano_ops/kepler/contact_points_test.py
which is not the same as the test file we want to collect:
  /Users/tom/gitcode/exoplanet/exoplanet/theano_ops/kepler/contact_points_test.py
HINT: remove __pycache__ / .pyc files and/or use a unique basename for your test file modules
________________________________ ERROR collecting exoplanet/theano_ops/kepler/solver_test.py ________________________________
import file mismatch:
imported module 'exoplanet.theano_ops.kepler.solver_test' has this __file__ attribute:
  /Users/tom/gitcode/exoplanet/build/lib/exoplanet/theano_ops/kepler/solver_test.py
which is not the same as the test file we want to collect:
  /Users/tom/gitcode/exoplanet/exoplanet/theano_ops/kepler/solver_test.py
HINT: remove __pycache__ / .pyc files and/or use a unique basename for your test file modules
________________________________ ERROR collecting exoplanet/theano_ops/starry/get_cl_test.py ________________________________
import file mismatch:
imported module 'exoplanet.theano_ops.starry.get_cl_test' has this __file__ attribute:
  /Users/tom/gitcode/exoplanet/build/lib/exoplanet/theano_ops/starry/get_cl_test.py
which is not the same as the test file we want to collect:
  /Users/tom/gitcode/exoplanet/exoplanet/theano_ops/starry/get_cl_test.py
HINT: remove __pycache__ / .pyc files and/or use a unique basename for your test file modules
_______________________________ ERROR collecting exoplanet/theano_ops/starry/limbdark_test.py _______________________________
import file mismatch:
imported module 'exoplanet.theano_ops.starry.limbdark_test' has this __file__ attribute:
  /Users/tom/gitcode/exoplanet/build/lib/exoplanet/theano_ops/starry/limbdark_test.py
which is not the same as the test file we want to collect:
  /Users/tom/gitcode/exoplanet/exoplanet/theano_ops/starry/limbdark_test.py
HINT: remove __pycache__ / .pyc files and/or use a unique basename for your test file modules
===================================================== warnings summary ======================================================
/Users/tom/anaconda3/lib/python3.6/site-packages/h5py/__init__.py:36
  /Users/tom/anaconda3/lib/python3.6/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`.
    from ._conv import register_converters as _register_converters

-- Docs: https://docs.pytest.org/en/latest/warnings.html
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 10 errors during collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
=========================================== 1 warnings, 10 error in 4.97 seconds ==========================================

[mrtommyb]

python setup.py develop

imports and works correctly

[dfm]

OK. Great! I see what's happening and I'm not sure why, but I'll try to work it out. Thanks for letting me know!

[dfm]

I figured it out. setup.py install should work for master now.