etasnadi / 3dcellannotator

3D Cell Annotator software

NEWS: roi_align 3D kernels for Tensorflow: https://github.com/etasnadi/roi_align_3D

• 👋 Hi, I’m @etasnadi
• 👀 I’m interested in bioimage analysis.
• 📫 You can reach me at [email protected]

My main projects:

• 3D Cell Annotator: a 3D active contour tool (an MITK plugin) to annotate objects in 3D
• DIC reconstruction: An OpenCL based tool to reconstruct DIC microscopy images.
• napari_nucleaizer: A nuclei segmentation plugin for Napari.

3dcellannotator's Issues

Installation problems

Hi @etasnadi,

I am trying to compile your release 0.2-alpha on a CentOS 7 machine but I am having some problems.

For instance, to compile SelectiveSegmentation gives:

3DCellAnnotator-0.2-alpha/SelectiveSegmentation/src/imagetools.cu(152): error: identifier "CV_LOAD_IMAGE_ANYDEPTH" is undefined. Some post suggests that this error is related to the absence of TIFF support. However, our version has it.

Therefore, I want to know if it is possible to get a list of build required dependencies and their respective versions.

Best,

Danilo

windows release ?

Hi,
the project website mentions Windows binary releases and links to the releases of the GitHub project here. Are there any releases available yet?