eqs / deeplabcut-docker

Dockerfile for DeepLabCut 2.0 (https://github.com/AlexEMG/DeepLabCut)

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deeplabcut-docker's Issues

Make fails when user/group ARGS are passed to shell as "0" instead of "1000"

See a very poor fix, but working fix diff here:

rckoepke@1d1b89d

Hardcoding user and group ARGS into the shell commands fixed an issue I was having:

When passing ${user_name}:${group_name}, etc etc, the shell was reading all the args as "0" instead of 1000 etc. This caused the make to fail.

Example 1 of failure when RUN groupadd -g ${group_id} ${group_name} was parsed as RUN groupadd -g 0 ${group_name}:

Step 8/27 : ARG group_id=1000
---> Using cache
---> 4e5b9a63b30e
Step 9/27 : RUN groupadd -g ${group_id} ${group_name}
---> Running in 30201b6ab1bb
groupadd: GID '0' already exists
The command '/bin/sh -c groupadd -g ${group_id} ${group_name}' returned a non-zero code: 4
Makefile:11: recipe for target 'docker-build' failed
make: *** [docker-build] Error 4

Example 1 of failure after hardcoding only groupadd, now RUN useradd -u ${user_id} -g ${group_id} -d /home/${user_name} --create-home --shell /bin/bash ${user_name} was parsed as RUN useradd -u 0 -g ${group_id} -d /home/${user_name} --create-home --shell /bin/bash ${user_name}:

Step 8/27 : ARG group_id=1000
---> Using cache
---> 4e5b9a63b30e
Step 9/27 : RUN groupadd -g 1000 ubuntu
---> Running in 35d12c8401c4
Removing intermediate container 35d12c8401c4
---> 57185d9d33e8
Step 10/27 : RUN useradd -u ${user_id} -g ${group_id} -d /home/${user_name} --create-home --shell /bin/bash ${user_name}
---> Running in 7d09306b8138
useradd: UID 0 is not unique
The command '/bin/sh -c useradd -u ${user_id} -g ${group_id} -d /home/${user_name} --create-home --shell /bin/bash ${user_name}' returned a non-zero code: 4
Makefile:11: recipe for target 'docker-build' failed
make: *** [docker-build] Error 4

I did perform:

sudo groupadd docker
and
sudo usermod -aG docker $USER
and restarted before making docker-build.

Verification of that step:

rckoepke@rk-DLC1804:~/DeepLabCut-Docker$ groups
rckoepke adm cdrom sudo dip plugdev lpadmin sambashare docker
rckoepke@rk-DLC1804:~/DeepLabCut-Docker$ groups rckoepke
rckoepke : rckoepke adm cdrom sudo dip plugdev lpadmin sambashare docker
rckoepke@rk-DLC1804:~/DeepLabCut-Docker$ id rckoepke
uid=1000(rckoepke) gid=1000(rckoepke) groups=1000(rckoepke),4(adm),24(cdrom),27(sudo),30(dip),46(plugdev),116(lpadmin),126(sambashare),999(docker)

[docker-build] Error 1

Hello

I am getting error while building the DLC Docker.

Collecting opencv-python-headless (from deeplabcut)
Downloading https://files.pythonhosted.org/packages/58/bf/fe6c0714289cb408db73bd0dc6fa931e85906cb7270f7197078311be1499/opencv-python-headless-4.5.1.48.tar.gz (88.3MB)
Complete output from command python setup.py egg_info:
Traceback (most recent call last):
File "", line 1, in
File "/tmp/pip-build-3se7kqbs/opencv-python-headless/setup.py", line 10, in
import skbuild
ModuleNotFoundError: No module named 'skbuild'

----------------------------------------

Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-3se7kqbs/opencv-python-headless/
You are using pip version 9.0.3, however version 21.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
The command '/bin/sh -c pip install deeplabcut' returned a non-zero code: 1
Makefile:11: recipe for target 'docker-build' failed
make: *** [docker-build] Error 1

Do you have any suggestion how this can be resolved ?

Kind regards

Robert

All GPUs are used when analyze_videos

Hi eqs,

I know you are not directly involved in DLC development, but I found some weird behavior that is described here: DeepLabCut/DeepLabCut#233

Have you experienced such behavior on your machine? I am using your dockerfile.

Cheers,