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sbfnk avatar sbfnk commented on August 25, 2024

I agree that measures of uncertainty would be important to add. Would your idea be to 1) store the raw data and construct summary statistics and CIs, or 2) to take them directly from the cited sources? For option (1) I think at the least we'd need to store the sample size alongside the estimates.

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joshwlambert avatar joshwlambert commented on August 25, 2024

For now we only have the parameters or summary statistics reported in the papers and do not have any raw data to infer the parameters or CIs ourselves. Usually papers report the sample size which is indeed needed for bootstrapping the CIs.

I've added a basic function that calculates the confidence intervals of a summary statistic (https://github.com/epiverse-trace/epiparameter/blob/feature/ci/R/calc_ci.R). However, there is a new issue (I can open a new issue if that helps organise things).

The distribution assumed in the function is either a gamma, lognormal or weibull. However, in many studies reporting summary statistics or distribution parameters the distribution is right-truncated. This paper give a clear example of the differences between the standard distribution and the truncated form. Using the bootstrapping function to calculate the CIs for these values will be biased as it lacks the right truncation. Any ideas on how to solve this issue?

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