epiverse-trace Goto Github PK

.github

blueprints

Software development blueprints for epiverse-trace

cfr

R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

cleanepi

R package to clean and standardize epidemiological data

colopendata

ColOpenData is a package that acquires and wrangles Colombian socioeconomic, geospatial and climate data

datatagr

Tagging, validating, and safeguarding data to help harden data pipelines.

epi-training-kit

An e-learning strategy for training on analysis, modelling and response to outbreaks and epidemics in Latin-America and the Caribbean

epichains

[Under active development] Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models

epico

R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

epidemics

A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

epimodelac

Training materials for the epimodelac workshop

epinetwork

Modelling transmission on real-world social networks

epiparameter

R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters

epiparameterdashboard

Explore the database of epidemiological parameters provided by the {epiparameter} package

epishiny

[FORK] Tools for interactive visualisation of epidemiological linelist data

episoap

[Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templates

epiverse

Meta-package for the Epiverse-TRACE R packages

epiverse-trace.github.io

Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally

epiverse-trace.r-universe.dev

R-universe for the epiverse-trace GitHub organisation

epiversedashboard

Epiverse-TRACE activity dashboard

epiversetheme

etdashboard

Developer dashboard for a universe overview of Epiverse-TRACE packages

etdev

Internal package providing tools for Epiverse-TRACE developers

etstats

finalsize

R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility

gam-summit

git-rstudio-basics

Version Control with Git using Rstudio

hex-stickers

howto

iraca

Agent-Based model simulation of mosquito-human interaction in the Colombian and LAC setting