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machine-learning

:earth_americas: machine learning tutorials (mainly in Python3)

microbiome-conferences-c

This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.

myfirstfork

Fork this repository and make changes to the README

ngs-pipe

NGS-pipe: next-generation sequencing pipelines for precision oncology

online_r_learning

Online R learning for applied statistics

oucru_bioinformatics_training

Materials for bioinformatics training at Oxford University Clinical Research Unit

phylter

Detection of outlier genes and species in phylogenomics

project-based-learning

Curated list of project-based tutorials

python-miniproject-eorgekit

This miniproject was done to enhance my pyhton software development skills in my first semester of M.Sc. Bioinformatics coursework. In this project I developed a command line interface software to obtain certain parts of a Protein Data Bank file and dispaly them on the standard output of the terminal.

python4bioinformaticsv2

Updated materials for MSc Bioinformatics for Pwani University

rdm_exercise

Exercises done during H3ABiONET RDM course

readytowear

Ready-made Taxonomic Weights Repository

ribodetector

Accurate and rapid RiboRNA sequences Detector based on deep learning

sickle

Windowed Adaptive Trimming for fastq files using quality

standardization-of-ig-datasets-using-universal-numbering-system-and-auto-generating-bridged-1d-maps

Protein Codeathon

statistical-genetics-resources

Resources (software, data, research article) in the field of statistical genetics

tama

Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)

tj_river_project

trimmomatic

voltron

VoltRon: spatial omic analysis toolbox for multiomic integration using image registration

workflows_and_package_management

Reproducibility and package management : workflow languages (CWL, Snakemake, Conda).

zumis

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs