eorgekit Goto Github PK

16s-itgdb

An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.

am_2024

Analaysis for the batch correction paper

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bacterial_variant_calling

A pipeline for variant calling on bacterial genomes created with Nextflow and singularity / docker

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics-workbook

Bioinformatics Workbook repository

boss-miniprojects

btm

Blood Transcription Modules for interpreting blood transcriptomics data

build-your-own-x

Master programming by recreating your favorite technologies from scratch.

cs-video-courses

List of Computer Science courses with video lectures.

deepsomatic

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

ecobiotec-ngs-tutorial

16S amplicon NGS - Hands-on

epicasscassvanet4dev

EpiCass Workshop

esoup

A wrapper around NCBI's Entrez utilities

gemma

Genome-wide Efficient Mixed Model Association

getting-started-with-open-source

github-slideshow

A robot powered training repository :robot:

introductions

An Introductory repo for maintainers, collaborators and the bioinformatics community at large

introductorygit

knitr

A general-purpose tool for dynamic report generation in R

kubernetes

Production-Grade Container Scheduling and Management

microbiome-conferences-c

This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.

myfirstfork

Fork this repository and make changes to the README

ngs-pipe

NGS-pipe: next-generation sequencing pipelines for precision oncology

online_r_learning

Online R learning for applied statistics

phylter

Detection of outlier genes and species in phylogenomics

python-miniproject-eorgekit

This miniproject was done to enhance my pyhton software development skills in my first semester of M.Sc. Bioinformatics coursework. In this project I developed a command line interface software to obtain certain parts of a Protein Data Bank file and dispaly them on the standard output of the terminal.

python4bioinformaticsv2

Updated materials for MSc Bioinformatics for Pwani University

rdm_exercise

Exercises done during H3ABiONET RDM course