Comments (6)
Hi
this error arise when there is no MS/MS data available, since MS-CleanR is for all ion fragmentation method.
Did you acquire the data in DIA or DDA mode?
from ms-cleanr.
Hi,
yes, my data is in DDA mode.
from ms-cleanr.
did you check the sample order (must be exactly the same) as for sample number and groups between pos and neg
from ms-cleanr.
otherwise, send me your output files from MSDIAL so I'll check your data ([email protected])
from ms-cleanr.
Hi, I just sent it to you. Please let me know if you need anything else.
from ms-cleanr.
Indeed QC should represent a mixture of all your sample
try to name three Ctrl as QC and keep three other as Ctrl and name them accordingly in the class column.
Also change the name of your sample by adding a letter before the number and remove the « _ » at the end.
If it doesn’t work, I don’t figure out what’s happening with your data.
Best,
G.
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Related Issues (14)
- Error in rowMeans: 'x' must be numeric [No stack trace available] HOT 19
- error in rowmeans HOT 2
- Time consumming workflow HOT 2
- Publish as package on CRAN or bioconda HOT 5
- Duplicated results - error HOT 2
- Help with Data Input and Processing in MS-CleanR from Agilent .D Format HOT 1
- Error in Negative mode HOT 5
- Error: only 0's may be mixed with negative subscripts HOT 1
- Example parameter file HOT 2
- Error 'x' must be numeric
- "Error: must have >1 column" HOT 4
- Does MS-CleanR only accept project directory that has both pos and neg mode data? HOT 1
- Intensity of compund in each group in annotated_MS_peaks-cleaned.csv is far from that in raw data HOT 2
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