Comments (2)
Dear Darius,
sorry for the late reply
indeed it will largely depend on dataset size in input
For instance, if the output from MSdial are above thousands of features, it may be very long.
As a rule of thumb, for orbitrap, use 100000 to 500000 as threshold value in MSdial, use 1000 to 10000 for QTOF based detector.
If you encounter more than 1000 features after MSdial, increase your threshold.
Best regards
G.
from ms-cleanr.
Another thing to consider is your feature RSD treshold set at "80" which seems really high, a value around "40" is more suitable
from ms-cleanr.
Related Issues (14)
- Error in rowMeans: 'x' must be numeric [No stack trace available] HOT 19
- error in rowmeans HOT 2
- Publish as package on CRAN or bioconda HOT 5
- Duplicated results - error HOT 2
- Help with Data Input and Processing in MS-CleanR from Agilent .D Format HOT 1
- Error in Negative mode HOT 5
- Error: only 0's may be mixed with negative subscripts HOT 1
- Example parameter file HOT 2
- Error 'x' must be numeric
- "Error: must have >1 column" HOT 4
- Error: replacement has 1 row, data has 0 HOT 6
- Does MS-CleanR only accept project directory that has both pos and neg mode data? HOT 1
- Intensity of compund in each group in annotated_MS_peaks-cleaned.csv is far from that in raw data HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from ms-cleanr.